Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilago_20xerochloae_20[genbank_20GCA_5F001736075.1_202016-09-20] 13,661 sequences; 24,230,715 total letters Query= NC_002816.1 Length=123500 Score E Sequences producing significant alignments: (Bits) Value seq23 116 3e-21 seq53 93.3 3e-14 seq52 87.8 1e-12 >seq23 Length=140287 Score = 116 bits (128), Expect = 3e-21 Identities = 153/212 (72%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 45125 AATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCG 45184 || || | ||||| ||||||||||||||||| ||||| || ||| || | || Sbjct 2444 AAAACTAGGTGCAAGGTGCTCTCCTTCTGAATATTGTAATCAGACAGAGTTCGTCCATCC 2385 Query 45185 TCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCC 45244 |||| ||||| || || || ||||| ||||| ||||||||||| | ||| ||||||||| Sbjct 2384 TCCAACTGTTTACCAGCAAAGATCAAACGCTGCTGGTCGGGAGGAATACCTTCCTTGTCC 2325 Query 45245 GCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTC 45304 ||| || || || | | | ||||| | ||||||||| | || ||||| Sbjct 2324 TGAATCTTGGCTTTGACATTGTCAATGGTGTCCGAGCTCTCCACCTCGAGTGTGATCGTT 2265 Query 45305 TTGCCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 ||||| || || ||||| |||||||| ||||| Sbjct 2264 TTGCCAGTAAGCGTCTTGACAAAGATCTGCAT 2233 Score = 107 bits (118), Expect = 2e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 45110 CCACCTCTCAATCTTAATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTC 45169 ||||||| ||||| || || | ||||| ||||| ||||||||||||||||| || Sbjct 2231 CCACCTCGCAATCGCAAGACAAGGTGCAAGGTGCTTTCCTTCTGAATGTTGTAATCCGAA 2172 Query 45170 AGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGC 45229 || |||| |||| |||| || || || || || || | || || || |||||||| Sbjct 2171 AGGGTGCGACCGTCTTCCAACTGCTTACCAGCAAAGATGAGTCGTTGCTGATCGGGAGGA 2112 Query 45230 ACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACC 45289 | ||||||||| ||| || || ||| || | | ||||| | ||| || Sbjct 2111 ATACCCTCCTTATCCTGGATCTTGGCCTTGACATTGTCGATCGTGTCCGAAGACTCGACT 2052 Query 45290 TCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 |||| || || ||||| || || || ||||| |||||||||||||| Sbjct 2051 TCCAAAGTGATGGTCTTTCCTGTGAGCGTCTTGACAAAGATTTGCAT 2005 Score = 104 bits (114), Expect = 2e-17 Identities = 149/210 (71%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187 ||||||||||| || |||||| || ||||||||||| || || | || || Sbjct 1757 ACCAAGTGCAGGGTCGACTCCTTTTGGATGTTGTAGTCCGAAAGAGTTCGTCCATCCTCA 1698 Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247 || || |||||||| || || | ||||| || |||||||| | |||||||||||| | Sbjct 1697 AGCTGCTTTCCGGCAAAAATGAGACGCTGCTGATCGGGAGGGATCCCCTCCTTGTCCTGA 1638 Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307 || || ||| || | | | |||| | ||| ||||| | ||| || ||||| Sbjct 1637 ATCTTGGCCTTGACGTTGTCAATGGTGTCGGAAGACTCAACCTCGAGGGTGATGGTCTTA 1578 Query 45308 CCCGTCAGAGTCTTCACAAAGATTTGCATG 45337 || ||||||||||| || ||||| |||||| Sbjct 1577 CCGGTCAGAGTCTTTACGAAGATCTGCATG 1548 >seq53 Length=94643 Score = 93.3 bits (102), Expect = 3e-14 Identities = 146/208 (70%), Gaps = 1/208 (0%) Strand=Plus/Plus Query 45130 CAAG-TGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCA 45188 |||| |||| ||| |||||||||||||||||||||| || || | || || | Sbjct 56341 CAAGATGCAAGGTGGACTCCTTCTGAATGTTGTAGTCGGAAAGGGTACGGCCATCTTCAA 56400 Query 45189 GTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAA 45248 | || || || || || || | ||||| ||||| ||||| | |||||||||||| || Sbjct 56401 GCTGCTTGCCTGCAAAGATAAGACGCTGCTGGTCAGGAGGAATGCCCTCCTTGTCCTGAA 56460 Query 45249 TTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGC 45308 | || ||| || | | ||||| ||| || || | ||||| ||||||| Sbjct 56461 TCTTGGCCTTGACGTTGTCGATAGTGTCCGAGGACTCGACTTCGAGCGTAATGGTCTTGC 56520 Query 45309 CCGTCAGAGTCTTCACAAAGATTTGCAT 45336 | |||| |||||| |||||||| ||||| Sbjct 56521 CGGTCAAAGTCTTGACAAAGATCTGCAT 56548 Score = 89.7 bits (98), Expect = 4e-13 Identities = 142/204 (70%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 45133 GTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTG 45192 ||| || ||| ||||||||| ||||||||||| || ||| | || || || || Sbjct 56573 GTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCCGAGAGGGTGCGGCCATCTTCGAGCTG 56632 Query 45193 TTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTT 45252 || || ||||| || | ||||| || ||||| || | || ||||||||| ||| || Sbjct 56633 CTTACCAGCGAAGATGAGTCGCTGCTGATCGGGTGGGATGCCTTCCTTGTCCTGAATCTT 56692 Query 45253 TTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGT 45312 ||| || | | | ||||| ||| ||||| | ||| || |||||||| || Sbjct 56693 GGCCTTGACATTGTCGATGGTGTCCGAGGACTCAACCTCGAGGGTGATGGTCTTGCCGGT 56752 Query 45313 CAGAGTCTTCACAAAGATTTGCAT 45336 || ||||| |||||||| ||||| Sbjct 56753 GAGGGTCTTGACAAAGATCTGCAT 56776 >seq52 Length=95535 Score = 87.8 bits (96), Expect = 1e-12 Identities = 144/208 (69%), Gaps = 0/208 (0%) Strand=Plus/Plus Query 45133 GTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTG 45192 ||| || ||| |||||||| ||||||||||| || ||| | || || || || Sbjct 17646 GTGAAGGGTGGATTCCTTCTGGATGTTGTAGTCCGAGAGGGTACGACCATCTTCGAGCTG 17705 Query 45193 TTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTT 45252 || |||||||| || | ||||| || || || || | ||| ||||||||| || || Sbjct 17706 CTTACCGGCGAAGATGAGACGCTGCTGATCAGGGGGAATACCTTCCTTGTCCTGGATCTT 17765 Query 45253 TTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGT 45312 ||| || | | | ||||| | ||| ||||| | ||| || ||||| ||||| Sbjct 17766 GGCCTTGACGTTGTCGATGGTGTCCGAAGACTCGACCTCGAGGGTGATGGTCTTACCCGT 17825 Query 45313 CAGAGTCTTCACAAAGATTTGCATGTTG 45340 || || || |||||||| ||||| ||| Sbjct 17826 GAGGGTTTTAACAAAGATCTGCATCTTG 17853 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 395009422571881