Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilago_20xerochloae_20[genbank_20GCA_5F001736075.1_202016-09-20] 13,661 sequences; 24,230,715 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq36 338 6e-88 seq67 172 5e-38 seq23 100 3e-16 seq53 95.1 1e-14 >seq36 Length=116313 Score = 338 bits (374), Expect = 6e-88 Identities = 1220/1894 (64%), Gaps = 68/1894 (4%) Strand=Plus/Plus Query 22114 TGTAAACTGTATGGCGTTTGCGGCCGGTTTGGTGCGAAGATAATACATGCCCGTCTTCAG 22173 ||| ||||| | ||||| | || || ||||| || || || || | || ||||| || Sbjct 37522 TGTGAACTGAACAGCGTTGGATGCTGGCTTGGTACGGAGGTAGTAGGTACCGGTCTTGAG 37581 Query 22174 ACCCATCTTCCACGCGTAAAAATGTATCGACGTCAATTTTCCATA------ACTCGGCAA 22227 |||| ||||||| |||| || || ||||| ||||| | || | | || ||| Sbjct 37582 ACCCTTCTTCCAACCGTAGAAGTGCATCGAAGTCAACTGACCGAAGGAAGGAGCCGACAA 37641 Query 22228 GTCCATGTACACATTGAACGACTGACTCTGATCGATAAACGCTCCTCGATCGGCGGCCAT 22287 || |||| ||| || ||| ||| || || || |||||||| |||||||| Sbjct 37642 GTGGATGT------TGAGGGATTGAGACTGGCAAATGAAAGCACCTCGATCAGCGGCCAT 37695 Query 22288 ATTTATCAATGTACGCATC---GACATTTCCCATACGGTCTTGTACAGTTGCCTGATCTC 22344 | || | || | || || || ||||| || |||||||| || | | |||| Sbjct 37696 GTCGATGA---TAGCCTTCTGGGAGATCTCCCAAACAGTCTTGTAGAGCTTCTTGAT--- 37749 Query 22345 TAACGGTATCGATTC----GATCCT-CTGGACGGACCCGTTATTGTGTATGATCAAA--- 22396 ||||| || | || | | ||||| ||| || | ||| ||| | | Sbjct 37750 --ACGGTCAGGAATACCAGGAACGTTCTGGATGGAACC---ACCGTGAGCGATAATACGG 37804 Query 22397 TTTTTAATCGTATCGTTCCACAAACCGATGGCGGTCAAATCTTTGACCAGATGACGGTTC 22456 || || || || ||||||||||| || || | || || || | |||| Sbjct 37805 TTCTTCATGGTGTCGTTCCACAATCCTTGCTCGACGAGTTCGCGGAGCAACCAAGGGTTG 37864 Query 22457 ACCACTTGAAACTCGCCGGACAAGACGCGGCGTTGGTAAATGTTGGATGTGAACGGTTCG 22516 || || || || || || | | ||| || || ||| |||||||| ||| | || ||| Sbjct 37865 ACGACCTGGAATTCACCAGCAAGGACACGACGAGAGTAGATGTTGGAGGTGTAGGGCTCG 37924 Query 22517 AAAGATTCATTGTTTCCCAGTATCTGAGCGGTCGAAGCGGTCGGCATCGGCGCCAACAGT 22576 || |||| ||| |||| |||||| || || ||||| ||||| || || | || Sbjct 37925 AAGCATTCGTTGAAACCCAAGATCTGACTTGTGGATGCGGTAGGCATGGGAGCGAGCAAG 37984 Query 22577 AGCGAGTTTCTCAAGCCGTGCTTTGAAATTTTACTCTTGAGCATCGACCAGTCCCACAGA 22636 |||||||| | | |||||||| | || || ||||||| | ||||||||| ||| Sbjct 37985 AGCGAGTTGCGAAGACCGTGCTTGGCGATCTTGGCCTTGAGCGAAGCCCAGTCCCAAAGA 38044 Query 22637 TCGGACGGCGTCACATTGTCCCACATATCGTATTGCAA--CACGCCGCGACTCGCCGGGC 22694 ||||| || || ||| ||||||| ||||| || | ||| | | || || ||| Sbjct 38045 TCGGAAGGGGTAACAC---CCCACATGTCGTACTGGAGTTCACCCTGGGAG--GCAGGGG 38099 Query 22695 TGCCTTCGTACGTTTCGTACGGACCATATATCGCGGCAAGTTCGCA-GCTCGCCTCCAAC 22753 || |||| || ||||| | |||| | ||| | ||||| | |||| || | Sbjct 38100 AACCGGCGTAGGTCTCGTAGGTGCCATGCTCCTGGGCCAACTCGCACGATCGC-TCGAGA 38158 Query 22754 GCGCCGTAATATATAGTCTCGAAGATTTTCTTGTTCAATTCGGCG-GC----GGCGACGC 22808 ||| ||| || || ||||||||||| | |||||| || || || |||||| | Sbjct 38159 GCGGCGTGGTAGATGGTCTCGAAGATCTGGACGTTCAAG-CGACGAGCCTCGGGCGACTC 38217 Query 22809 TTTCGTACGGCATA-CGCATCATCACGAACGCGTCCGCCATACCCTGAACGCCTATACCG 22867 | ||| || | ||| |||| ||| || || || | |||||| || || ||||| Sbjct 38218 A-----AAGGCGTAACCCATGATCATGAAGGCATCGGCGAGACCCTGGACACCGATACCA 38272 Query 22868 ATCGGTCGGTTTTTCAGATTCGACACTTTTGCCTCGGGCAAAGGATACCAATTCGAATCG 22927 || || |||| || || || ||||| | ||| || | || |||| Sbjct 38273 ATGGGGCGGTGACGCATGTTAGAACGACGAGCCTCCTCAACAGGGTAGTAGTTGATATCG 38332 Query 22928 ATTGTTCTGTTCAAGTTTCTGGTCACAATTTTCGTTATNNNNNNNNNNNNNTCAAAGTCG 22987 || || |||||||||| || | | || | | | |||||| Sbjct 38333 ATGATTTTGTTCAAGTTCTTGCAGATAGCCTTGGCAACCTCGTGCAAACGCTTGAAGTCG 38392 Query 22988 TAAACGCCCGATT----GTACAACAAACTTGTTGACGGCGATCGAGGCAAGATTGCATAC 23043 || || | | | | | | || || | ||||| |||||||| ||||| || Sbjct 38393 TAGAC-CTTGGTAACGGGGTCGATGAAGGTGGGAAGAGCGATGGAGGCAAGGTTGCAAAC 38451 Query 23044 GGCCACCTCGTCTTTGGACGTGTACTCTACAATTTCGGTACATAGATTGCTACACTTTAT 23103 || ||||| || | ||||||| | || || || || | ||| ||||| || Sbjct 38452 AGCAACCTCATCGGGAGCACTGTACTCGATGATCTCAGTGCACAAGTTGGAGCACTTGAT 38511 Query 23104 CGTGCCCAAATTGCTCTGGTTGCTTTTTCGATTGCACGAATCCTTGTAGAGCATGTACGG 23163 || || | || |||||||| || || ||| | ||||||||||| ||| | || Sbjct 38512 AGTACCGAGGTTCTTCTGGTTGGACTTGCGGTTGGCAGCGTCCTTGTAGAGGATGAAGGG 38571 Query 23164 CGTGCCCGTCTCGACCTGCGACTCGATGATCGCTCGCCACATAGTCTGAGCGTGAACACG 23223 | || |||||| ||||||||||| ||| || ||| | ||||||| | || Sbjct 38572 GTTACCGGTCTCGGTCTGCGACTCGAGGATGGCGTACCAGAGCTTCTGAGCCTTGACGGT 38631 Query 23224 TCGCACGTACCTGCCTTCTTCCTCGTACTTTTGGTACA-ACGCGTCAAATTCGGCACCGT 23282 ||| | | ||||| ||||||| | ||| | |||| || || || |||||| Sbjct 38632 GCGCTTTGAGCGACCTTCGGCCTCGTAACGCTCGTAGAGACGC-TCGAACTCTTCACCGT 38690 Query 23283 AACAGTCGGCCAGGCCGGGCGATTGCATCGGACACATGAGACTCCACATTGAGTCATTTT 23342 | |||||||| || ||||| | | | || |||||||| ||| || | | Sbjct 38691 AGCAGTCGGCAAGACCGGGGCACTCGTTGGGGCACATGAGCGACCAATCACCGTTCTGCT 38750 Query 23343 CAACGCGTCTCATAAAAAGATCCGGTATCCATAGAGCGTAGAACAGTTCGCGGGCGCGCA 23402 |||| | |||| || ||||| || | ||| ||||||||||| ||||| ||||| || | Sbjct 38751 CAACCCTCTTCATGAAGAGATCGGGAACCCAGAGAGCGTAGAAGAGTTCACGGGCACGAA 38810 Query 23403 CCTCCTCTTTGCCGGTGTTCTTTTTCAAATCCAAAAAGTCCAACACGTCCGCATGCCACG 23462 | || || || ||| |||||| ||| || | || || || || |||| ||||| | Sbjct 38811 CTTCTTCCTTACCGTGGTTCTTGCGCAAGTCGAGGAACTCAAAGACATCCGAGTGCCAAG 38870 Query 23463 GCTCGAGGTAAACGGCAAACGCGCCCGGTCTCTTATTGCCGCCCTGATCGACGTAACGGG 23522 |||| | ||| | |||||| || || || | ||| || || ||||| ||||||||||||| Sbjct 38871 GCTCAATGTAGATGGCAAAGGCACCGGGACGCTTGTTACCACCCTGGTCGACGTAACGGG 38930 Query 23523 CCGTGTTGTTGTACACTCTTAGCATCGGCACGAGACCGTTGGACGCGCCGCCTACGCCCG 23582 | ||||||||| | || | ||||| || |||| ||||||| | ||| ||| | Sbjct 38931 CGGTGTTGTTGAAGACACGAAGCATGGGAACGATACCGTTGCTGACACCGTTGGTGCCGG 38990 Query 23583 CCACACTCGAACCTTTTGCTCGAACGTTGTGAACGTGGAAACCTATGCCTCCGCCCGATT 23642 | | || || | |||||| | ||||| || ||||| ||||| ||| | | | Sbjct 38991 CAATGTAGGAGCCAGTACCTCGAATGCAGTGAATGTTCAAACCAATGCCACCGGCGGTCT 39050 Query 23643 TCGATATCATCGCGCATTGTTTCAGAGTGTCGTAGATGCCCTCGATGCTGTCCTCTTTGG 23702 | || ||||| || || || || |||||||| ||||| ||||| ||| || || Sbjct 39051 TGGAGATCATGGCACAGGTCTTGAGGGTGTCGTAAATGCCGTCGATCGAGTCATCCTTCA 39110 Query 23703 TCGCGACCAAGAAACACGAAGACATTTGCGCTTTGGGCGTAGCGGCCGAGAACAGTGTCG 23762 | | || | |||||| || || | || | | ||| ||| | || ||| || || | Sbjct 39111 TGGTAACAAGGAAACAGGACGAGAGCTGTGGGTGGGGAGTACCAGCGTTGAAGAGGGTTG 39170 Query 23763 GGCTGGCGTGCGTAAAGTATCCATTCGACATTAGATTGTACGTGTCGATGGCGGCATCAA 23822 | |||||| |||||||| | |||||| || |||||||| ||||||||| || | Sbjct 39171 GCGAGGCGTGAGTAAAGTACTTTTGCGACATGAGGTTGTACGTCTCGATGGCGCTCTCGA 39230 Query 23823 TGTCCTCTCCGTGTATACCGATGGCGACGCGCATCATCATGTATTGAGGTCTCT---CGA 23879 |||||| ||||| ||||| | || || ||||| | ||||| || || | || | | Sbjct 39231 TGTCCTGGCCGTGAATACCAACAGCAACACGCATGAGCATGTGCTGGGGACGCTCAGCAA 39290 Query 23880 CCGTGACGCCGTTAATTTTGAACAGATATGAACGTTGCATCGTTTTAAATCCAAAATAGT 23939 || | |||||| || || || || ||||| | | || || || || || ||| Sbjct 39291 CCTT---GCCGTTGATGCGGAGCAAGTAGGAACGCTCGAGAGTCTTGAAGCCGAAGAAGT 39347 Query 23940 CATAGTTAAAGTCACGATCGTGCACTATGGCCGA 23973 |||| ||||| || |||| | || ||||| Sbjct 39348 TGTAGTGGAAGTCGCGCTCGTAGATGATAGCCGA 39381 >seq67 Length=86059 Score = 172 bits (190), Expect = 5e-38 Identities = 446/674 (66%), Gaps = 27/674 (4%) Strand=Plus/Minus Query 57570 ATTTGGAACATGTACAAAAAGGCAGAAGCATCGTTTTGGACCGTCGAAGAAGTAGACCTG 57629 |||||| | |||||||| |||||||| || || |||||||||| ||| || | ||||| Sbjct 5192 ATTTGGCAAATGTACAAGAAGGCAGAGGCTTCCTTTTGGACCGCCGAGGAGATCGACCTT 5133 Query 57630 TCTAAGGATCTGAGCGATTGGGATTCC---CTCAAAGAATCTGAGAGAAATTTTATTAAA 57686 || ||||| || || ||||| | ||||| || ||| | | ||||| Sbjct 5132 TCCAAGGACCTCCATGACTGGGACAACAAGCTCAACGACAACGAGCGTCACTTTATCTCC 5073 Query 57687 CACGTGTTGGCGTTTTTCGCCGCATCCGATGGTATTGTTAACGAGAATTTGGTCGAAAGA 57746 ||||| | || || ||||| || ||||||||||| || |||||||| | |||| || Sbjct 5072 CACGTCCTCGCCTTCTTCGCTGCTTCCGATGGTATCGTCAACGAGAACCTCGTCG--AGC 5015 Query 57747 TTTTCA--CAAGAAGTGCAAGTGACGGAGGCGAGATGCTTTTACGGATTTCAAGTGGCCA 57804 ||||| ||||| || | | ||||| ||||||| || || || || | | Sbjct 5014 GTTTCAGTTCCGAAGTTCAGGCTGCCGAGGCTCGATGCTTCTATGGTTTCCAGATCATGA 4955 Query 57805 TTGAAAACGTGCATTCAGAAATGTATTCGCTACTCATCGA----TACGTACGTGAAGGAC 57860 | || ||| | || || || | || ||||| |||||||| ||| | ||||| Sbjct 4954 TGGAGAACATTCACTCCGAGACTTACTCGCTCCTCATCGACACCTACATTCGTGAGCCTG 4895 Query 57861 AACGACGAGAAACGTAGACTGTTCAACGCGATCGAAACAATGCCCGCGATCGCCA---AG 57917 | | |||||| || || |||| |||| || || |||| ||| || || Sbjct 4894 AGCAGCGAGAA----TTCCTCTTTGACGCCGTCGAGACCATCCCCG---TCGTCAAGCAG 4842 Query 57918 AAGGCAGAGTGGTCAATCAAATGGATAAAAAGCGCCACGGCCACGTTCGCCGAGAGGCTA 57977 ||||| || ||| | | ||||| | | || ||||| |||||||| | || Sbjct 4841 AAGGCCGACTGGGCTCTTCGTTGGATCAGCGACCGCAAAGCCACCTTCGCCGAACGTCTC 4782 Query 57978 ATCGCGTTCGCCGCCGTCGAAGGTATATTCTTTTCGGGCAGCTTTGCGGCAATATTTTGG 58037 | || || ||||| || || ||||| ||||| || ||| ||| || | || || ||| Sbjct 4781 GTTGCCTTTGCCGCAGTTGAGGGTATCTTCTTCTCCGGCTCCTTCGCCTCCATCTTCTGG 4722 Query 58038 ATGAAGAAACGCGGCCTGATGCCCGGCCTGACGTTTAGCAACGAGTTGATATCGCGCGAC 58097 | ||||| || || || |||||||| || || || ||||||| | || || |||||| Sbjct 4721 CTCAAGAAGCGTGGTCTTATGCCCGGACTCACCTTCTCCAACGAGCTCATCTCACGCGAC 4662 Query 58098 GAGGGTCTCCATACTGATTTTGCGTGCCTAATGTACTCTCACATTGTCAATAAAC---CG 58154 || ||||| || || || || || ||||| | | | |||| |||| || | || Sbjct 4661 GAAGGTCTTCACACCGACTTCGCCTGCCTCCTCTTCAGTCAC---CTCAAGAAGCGCGCG 4605 Query 58155 ACGCGGGATCGCATCTTGGACATTATCACCGAGGCGGTCGCGATCGAAAATGAGTTTGTC 58214 | |||| | || | | || ||| ||||||| |||| ||||| || ||||| || Sbjct 4604 CACCCGGATACCGTCCTCAAAATCATCGCCGAGGCAGTCGAAATCGAGAAAGAGTTCCTC 4545 Query 58215 ACCGAAGCCCTACC 58228 | | || ||||| Sbjct 4544 AGCACGGCTCTACC 4531 >seq23 Length=140287 Score = 100 bits (110), Expect = 3e-16 Identities = 152/214 (71%), Gaps = 2/214 (1%) Strand=Plus/Plus Query 31192 CATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTC 31251 |||||| || ||||||||||||||||| || || || |||||| |||| ||||| | || Sbjct 1548 CATGCAGATCTTCGTAAAGACTCTGACCGGTAAGACCATCACCCTCGAGGTTGAGTCTTC 1607 Query 31252 CGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 ||||| | || | ||||| | || ||||||||| || | || ||||| || Sbjct 1608 CGACACCATTGACAACGTCAAGGCCAAGATTCAGGACAAGGAGGGGATCCCTCCCGATCA 1667 Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATG-ACTATGAGCGATTATA 31370 ||||||||| || || || || || ||| | || || | | | ||| | || || | Sbjct 1668 GCAGCGTCTCATTTTTGCCGGAAAGCAGCTTGAGGA-TGGACGAACTCTTTCGGACTACA 1726 Query 31371 ACATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404 |||| ||||| || ||||| || || |||| || Sbjct 1727 ACATCCAAAAGGAGTCGACCCTGCACTTGGTCCT 1760 Score = 96.9 bits (106), Expect = 3e-15 Identities = 117/157 (75%), Gaps = 2/157 (1%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| |||||||| ||||| |||| ||||| || || || |||| || || | || Sbjct 1777 ATGCAGATTTTCGTCAAGACCTTGACCGGCAAGACCATTACGCTCGAAGTCGAGTCCTCG 1836 Query 31253 GACAGTGTCGA-AACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 |||| | |||| |||| | | | ||| | ||||||||||||| | || || ||||| Sbjct 1837 GACACTATCGACAACGTTAAGGCCAAGA-TCCAGGACAAGGAAGGCATTCCCCCTGACCA 1895 Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGAC 31348 ||||||||| || || ||||| || ||| | |||||| Sbjct 1896 GCAGCGTCTTATCTTTGCTGGAAAGCAGCTCGAAGAC 1932 Score = 96.9 bits (106), Expect = 3e-15 Identities = 138/192 (72%), Gaps = 2/192 (1%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| || || || ||||| || || |||||||||||||| |||| || || || Sbjct 2233 ATGCAGATCTTTGTCAAGACGCTTACTGGCAAAACGATCACACTCGAGGTGGAGAGCTCG 2292 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| | || | |||||| | || |||||||||||| | || ||||||||| Sbjct 2293 GACACCATTGACAATGTCAAAGCCAAGATTCAGGACAAGGAAGGTATTCCTCCCGACCAG 2352 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATG-ACTATGAGCGATTATAA 31371 |||||| | || || ||||| ||||||||||| || | | | ||| || ||||| || Sbjct 2353 CAGCGTTTGATCTTTGCTGGTAAACAGTTGGAGGA-TGGACGAACTCTGTCTGATTACAA 2411 Query 31372 CATTCAAAAAGA 31383 ||||| || || Sbjct 2412 TATTCAGAAGGA 2423 >seq53 Length=94643 Score = 95.1 bits (104), Expect = 1e-14 Identities = 114/155 (74%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| || || || ||||| || || ||||| || |||||| |||| ||||| | || Sbjct 56776 ATGCAGATCTTTGTCAAGACCCTCACCGGCAAGACCATCACCCTCGAGGTTGAGTCCTCG 56717 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| |||| | ||||| | || ||||||||||||| | || ||||| ||| Sbjct 56716 GACACCATCGACAATGTCAAGGCCAAGATTCAGGACAAGGAAGGCATCCCACCCGATCAG 56657 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGA 31347 ||||| || || |||||||| || ||| | ||||| Sbjct 56656 CAGCGACTCATCTTCGCTGGTAAGCAGCTCGAAGA 56622 Score = 87.8 bits (96), Expect = 2e-12 Identities = 156/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| || || || |||||| |||| ||||| || || || |||| || || | || Sbjct 56548 ATGCAGATCTTTGTCAAGACTTTGACCGGCAAGACCATTACGCTCGAAGTCGAGTCCTCG 56489 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| | |||| | ||||| | || ||||||||| ||| | || || |||||| Sbjct 56488 GACACTATCGACAACGTCAAGGCCAAGATTCAGGACAAGGAGGGCATTCCTCCTGACCAG 56429 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 |||||||| || || || ||||| ||| | ||||| || | ||| || ||| Sbjct 56428 CAGCGTCTTATCTTTGCAGGCAAGCAGCTTGAAGATGGCCGTACCCTTTCCGACTACAAC 56369 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGT 31420 ||||| || || || || | ||||| || || | || | |||||| Sbjct 56368 ATTCAGAAGGAGTCCACCTTGCATCTTGTCCTCCGTCTTCGTGGCGGT 56321 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445690279815120