Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilago_20xerochloae_20[genbank_20GCA_5F001736075.1_202016-09-20] 13,661 sequences; 24,230,715 total letters Query= NC_003225.3 Length=309286 Score E Sequences producing significant alignments: (Bits) Value seq67 132 1e-25 >seq67 Length=86059 Score = 132 bits (146), Expect = 1e-25 Identities = 170/232 (73%), Gaps = 3/232 (1%) Strand=Plus/Minus Query 101844 TCCCCGCCATCAAGAAGAAGGAGCAGTGGGCTATTAATTGGAT--GCAAA-GCAATAACG 101900 |||||| | ||||| |||||| | |||||| || |||||| || | |||| | Sbjct 4858 TCCCCGTCGTCAAGCAGAAGGCCGACTGGGCTCTTCGTTGGATCAGCGACCGCAAAGCCA 4799 Query 101901 ATTTGGCGGAACTAATTGTTGCCTTTGCTGCAGTTGAAGGAATCTTCTTTAGTGGTGCAT 101960 || || |||| | ||||||||||| |||||||| || |||||||| || | | Sbjct 4798 CCTTCGCCGAACGTCTCGTTGCCTTTGCCGCAGTTGAGGGTATCTTCTTCTCCGGCTCCT 4739 Query 101961 TCGCATCCATTTTCTGGATCAAGAACAGGGGTATTTTGCCTGGTCTCACCTCCTCCAATG 102020 |||| ||||| |||||| ||||||| | ||| || |||| || ||||||| |||||| | Sbjct 4738 TCGCCTCCATCTTCTGGCTCAAGAAGCGTGGTCTTATGCCCGGACTCACCTTCTCCAACG 4679 Query 102021 AGTTCATTTCTAGGGACGAAGGTCTTCATCGCGACTTTGCATGCATGCTGTT 102072 || |||| || | |||||||||||||| |||||| || ||| | || || Sbjct 4678 AGCTCATCTCACGCGACGAAGGTCTTCACACCGACTTCGCCTGCCTCCTCTT 4627 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 989410791566255