Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilago_20xerochloae_20[genbank_20GCA_5F001736075.1_202016-09-20] 13,661 sequences; 24,230,715 total letters Query= NC_003391.1 Length=205719 Score E Sequences producing significant alignments: (Bits) Value seq36 149 8e-31 seq67 116 5e-21 >seq36 Length=116313 Score = 149 bits (164), Expect = 8e-31 Identities = 445/681 (65%), Gaps = 8/681 (1%) Strand=Plus/Plus Query 66027 GGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATC 66086 || ||||| | |||||| || |||| | || || | ||||| |||||||| |||| | Sbjct 38720 GGGCACATGAGCGACCAATCACCGTTCTGCTCAACCCTCTTCATGAAGAGATCGGGAACC 38779 Query 66087 CAAAGAGCTATAAATAAATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGA 66146 || ||||| || | || | || | | ||| || || || ||||| | Sbjct 38780 CAGAGAGCGTAGAAGAGTTCACGGGCACGAACTTCTTCCTTACCGTGGTTCTTGCGCAAG 38839 Query 66147 TCGAGGAACGCCATAATATCATAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGC 66206 ||||||||| | | | ||| | ||||| || || | ||| ||||| | | || || Sbjct 38840 TCGAGGAACTCAAAGACATCCGAGTGCCAAGGCTCAATGTAGATGGCAAAGGCACCGGGA 38899 Query 66207 CGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGA 66266 || ||||| || ||||| || | ||| | |||||||| || | || | | ||| ||| Sbjct 38900 CGCTTGTTACCACCCTGGTCGACGTAACGGGCGGTGTTGTTGAAGACACGAAGCATGGGA 38959 Query 66267 ATAATACCATTGGATGTACCATTGGTCCCGGAGATATAGCTTCCACTTGCACGAATATTA 66326 | ||||| ||| ||| ||||| |||| || ||| ||| | | ||||| | Sbjct 38960 ACGATACCGTTGCTGACACCGTTGGTGCCGGCAATGTAGGAGCCAGTACCTCGAATGC-A 39018 Query 66327 CTAATTGAT-AGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGT 66385 | | || | | ||| || || || || | || ||||| | || || || | || Sbjct 39019 GTGAATGTTCAAACCAATGCCACCGGCGGTCTTGGAGATCATGGCACAGGTCTTGAGGGT 39078 Query 66386 ATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAG--CTAGACATT 66443 || || ||||| || || |||||| ||||| ||| || |||||| | ||| | Sbjct 39079 GTCGTAAATGCCGTCGATCGAGTCATCCTTCATGGTAACAAGGAAACAGGACGAGAGCTG 39138 Query 66444 TGG-TGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTC 66502 ||| || || || || || || || | ||| || || ||||| ||||| | |||| Sbjct 39139 TGGGTGGGGAGTA---CCAGCGTTGAAGAGGGTTGGCGAGGCGTGAGTAAAGTACTTTTG 39195 Query 66503 AGAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGC 66562 || | || ||||||||||| || || || || ||| ||||| || || || Sbjct 39196 CGACATGAGGTTGTACGTCTCGATGGCGCTCTCGATGTCCTGGCCGTGAATACCAACAGC 39255 Query 66563 GACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAACAAGTA 66622 |||||||| | ||||||||| || | ||| | | |||| ||| || | |||||| Sbjct 39256 AACACGCATGAGCATGTGCTGGGGACGCTCAGCAACCTTGCCGTTGATGCGGAGCAAGTA 39315 Query 66623 GGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAAT 66682 ||| || | ||| || || || || ||||||| ||||| || ||||| || || Sbjct 39316 GGAACGCTCGAGAGTCTTGAAGCCGAAGAAGTTGTAGTGGAAGTCGCGCTCGTAGATGAT 39375 Query 66683 AACCGAGTTGAGTTTATCCTT 66703 | |||||| || | ||||| Sbjct 39376 AGCCGAGTCAAGCTGGTCCTT 39396 >seq67 Length=86059 Score = 116 bits (128), Expect = 5e-21 Identities = 363/558 (65%), Gaps = 8/558 (1%) Strand=Plus/Plus Query 36158 CATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGT 36217 || ||||| ||| ||| ||||| ||||| | || | |||||||| || |||||| Sbjct 4636 CAGGCGAAGTCGGTGTGAAGACCTTCGTCGCGTGAGATGAGCTCGTTGGAGAAGGTGAGT 4695 Query 36218 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAA 36277 |||||||| || |||||||| || ||||| || ||||| || || || || || ||||| Sbjct 4696 CCGGGCATAAGACCACGCTTCTTGAGCCAGAAGATGGAGGCGAAGGAGCCGGAGAAGAAG 4755 Query 36278 ATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGGC---ACTGTCATGT 36334 || || || ||||| |||||||||| || | || | | ||| | ||| Sbjct 4756 ATACCCTCAACTGCGGCAAAGGCAACGAGACGTTCGGCGAAGGTGGCTTTGCGGTCGCTG 4815 Query 36335 ATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGCATTA 36394 ||||| ||||||| |||||||||| || || || || ||||| | || | | Sbjct 4816 ATCCAACGAAGAGCCCAGTCGGCCTTCTGCTTGACGACGGGGATGGTCTCGACGGCGTCA 4875 Query 36395 AAGAGATAGtttttttCATTACTATCTTTAACATATGTATCAATCAAAAGACTATACATT 36454 ||||| | | | | | | || || || || || || | || || | Sbjct 4876 AAGAGGAATTCTCGCTGCTCAGGCTCACGAATGTAGGTGTCGATGAGGAGCGAGTAAGTC 4935 Query 36455 TCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAACATCTAGCCTCGGTAATC 36514 || || |||||||| || || || || || || ||||| |||| |||||||| | | Sbjct 4936 TCGGAGTGAATGTTCTCCATCATGATCTGGAAACCATAGAAGCATCGAGCCTCGGCAGCC 4995 Query 36515 TGTACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCA 36574 || ||||| | || || || || | | || || || || || || || || || Sbjct 4996 TGAACTTCGGAACTGAAACGCTCGACGAGGTTCTCGTTGACGATACCATCGGAAGCAGCG 5055 Query 36575 AAAAACGCCAATACATGTTTTATAAAATATTTTTCGTT-TGGTGTTAGTTTATT---CCA 36630 || || || | || || ||||| | ||||| | || | || || || ||| Sbjct 5056 AAGAAGGCGAGGACGTGGGAGATAAAGTGACGCTCGTTGTCGT-TGAGCTTGTTGTCCCA 5114 Query 36631 ATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTT 36690 |||| || || || || | || | || || | |||||||| || ||||||||||| Sbjct 5115 GTCATGGAGGTCCTTGGAAAGGTCGATCTCCTCGGCGGTCCAAAAGGAAGCCTCTGCCTT 5174 Query 36691 TTTATACATATTCCAGAT 36708 || ||||| | ||| || Sbjct 5175 CTTGTACATTTGCCAAAT 5192 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 658060408767240