Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilago_20xerochloae_20[genbank_20GCA_5F001736075.1_202016-09-20] 13,661 sequences; 24,230,715 total letters Query= NC_003529.1 Length=155060 Score E Sequences producing significant alignments: (Bits) Value seq23 107 2e-18 seq53 89.7 5e-13 >seq23 Length=140287 Score = 107 bits (118), Expect = 2e-18 Identities = 165/230 (72%), Gaps = 4/230 (2%) Strand=Plus/Minus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 ||||| || | ||||||||||| ||| | || ||| || ||||| || ||||| | Sbjct 2459 CCGCCACGCAGACGCAAAACTAGGTGCAAGGTGCTCTCCTTCTGAATATTGTAATCAGAC 2400 Query 139598 ATTGTGC-TCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 139656 | || | || | || || | ||||||||||||| |||||| ||| ||||| |||||||| Sbjct 2399 AGAGTTCGTCCA-TCCTCCAACTGTTTACCAGCAAAGATCAAACGCTGCTGGTCGGGAGG 2341 Query 139657 TATGCCTTCTTTGTCGGTGATTTTTTG-TTTTAGCTGTTCCACTGTGTCGGTGGGCTCCA 139715 || ||||| ||||| ||| | || | ||| | | || | ||||| | | ||||| Sbjct 2340 AATACCTTCCTTGTC-CTGAATCTTGGCTTTGACATTGTCAATGGTGTCCGAGCTCTCCA 2282 Query 139716 CCTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCATA 139765 |||| | || | ||| ||||| || | ||| || || || || |||||| Sbjct 2281 CCTCGAGTGTGATCGTTTTGCCAGTAAGCGTCTTGACAAAGATCTGCATA 2232 Score = 95.1 bits (104), Expect = 1e-14 Identities = 115/157 (73%), Gaps = 0/157 (0%) Strand=Plus/Minus Query 139609 GTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTT 139668 |||||||||||| || |||||| |||| ||||| ||||| || || || |||||||| || Sbjct 1932 GTCTTCGAGCTGCTTTCCAGCAAAGATAAGACGCTGCTGGTCAGGGGGAATGCCTTCCTT 1873 Query 139669 GTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCAC 139728 ||| ||| || || | | || | ||||| | || ||| || || | || | Sbjct 1872 GTCCTGGATCTTGGCCTTAACGTTGTCGATAGTGTCCGAGGACTCGACTTCGAGCGTAAT 1813 Query 139729 CGTCTTGCCGGTCAACGTTTTTACGAATATTTGCATA 139765 |||||||||||||| || || ||||| || |||||| Sbjct 1812 GGTCTTGCCGGTCAAGGTCTTGACGAAAATCTGCATA 1776 Score = 89.7 bits (98), Expect = 5e-13 Identities = 162/232 (70%), Gaps = 4/232 (2%) Strand=Plus/Minus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || || || | ||| | || ||||| | || ||||| ||||| ||||| || || Sbjct 1775 CCACCACGGAGACGGAGGACCAAGTGCAGGGTCGACTCCTTTTGGATGTTGTAGTCCGAA 1716 Query 139598 ATTGTGC-TCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 139656 | || | || | || || ||||| || || ||| | || ||||| |||||||||||||| Sbjct 1715 AGAGTTCGTCCA-TCCTCAAGCTGCTTTCCGGCAAAAATGAGACGCTGCTGATCGGGAGG 1657 Query 139657 TATGCCTTCTTTGTCGGTGATTTTTTG-TTTTAGCTGTTCCACTGTGTCGGTGGGCTCCA 139715 || || || ||||| ||| | || | || | | || | ||||||| | ||| | Sbjct 1656 GATCCCCTCCTTGTC-CTGAATCTTGGCCTTGACGTTGTCAATGGTGTCGGAAGACTCAA 1598 Query 139716 CCTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCATAGC 139767 |||| | ||| | ||||| ||||||| || |||||||| || ||||| || Sbjct 1597 CCTCGAGGGTGATGGTCTTACCGGTCAGAGTCTTTACGAAGATCTGCATGGC 1546 Score = 82.4 bits (90), Expect = 8e-11 Identities = 155/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || ||||| || ||||| || | ||| | || || || |||||||| ||||| Sbjct 2231 CCACCTCGCAATCGCAAGACAAGGTGCAAGGTGCTTTCCTTCTGAATGTTGTAATCCGAA 2172 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | |||| |||||| | ||| ||||||||| |||| || ||||||||||||||||| Sbjct 2171 AGGGTGCGACCGTCTTCCAACTGCTTACCAGCAAAGATGAGTCGTTGCTGATCGGGAGGA 2112 Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACC 139717 || || || || || ||| || || | | || | ||||| | | ||| || Sbjct 2111 ATACCCTCCTTATCCTGGATCTTGGCCTTGACATTGTCGATCGTGTCCGAAGACTCGACT 2052 Query 139718 TCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCATA 139765 || | || | ||||| || || | ||| || || || ||||||||| Sbjct 2051 TCCAAAGTGATGGTCTTTCCTGTGAGCGTCTTGACAAAGATTTGCATA 2004 >seq53 Length=94643 Score = 89.7 bits (98), Expect = 5e-13 Identities = 115/156 (74%), Gaps = 2/156 (1%) Strand=Plus/Plus Query 139610 TCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTG 139669 ||||||||||| |||||||| |||| || || ||||||||||| || |||||||| ||| Sbjct 56622 TCTTCGAGCTGCTTACCAGCGAAGATGAGTCGCTGCTGATCGGGTGGGATGCCTTCCTTG 56681 Query 139670 TCGGTGATTTTTTG-TTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCAC 139728 || ||| | || | || | | || | ||||| | || ||| ||||| | ||| | Sbjct 56682 TC-CTGAATCTTGGCCTTGACATTGTCGATGGTGTCCGAGGACTCAACCTCGAGGGTGAT 56740 Query 139729 CGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 ||||||||||| | || || || || || ||||| Sbjct 56741 GGTCTTGCCGGTGAGGGTCTTGACAAAGATCTGCAT 56776 Score = 82.4 bits (90), Expect = 8e-11 Identities = 139/199 (70%), Gaps = 2/199 (1%) Strand=Plus/Plus Query 139568 GTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTGTTTACCA 139627 || ||||| || |||||||| || ||| | || | ||||| ||||| || || Sbjct 56352 GTGGACTCCTTCTGAATGTTGTAGTCGGAAAGGGTACGGCCATCTTCAAGCTGCTTGCCT 56411 Query 139628 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTTTGTTTT 139687 ||| |||| ||||| ||||| || ||||| ||||| || ||||| ||| | || | || Sbjct 56412 GCAAAGATAAGACGCTGCTGGTCAGGAGGAATGCCCTCCTTGTCC-TGAATCTTGGCCTT 56470 Query 139688 AGCTGT-TCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTCAACGT 139746 | | || | ||||| | || ||| || || | || | |||||||||||||| || Sbjct 56471 GACGTTGTCGATAGTGTCCGAGGACTCGACTTCGAGCGTAATGGTCTTGCCGGTCAAAGT 56530 Query 139747 TTTTACGAATATTTGCATA 139765 || || || || |||||| Sbjct 56531 CTTGACAAAGATCTGCATA 56549 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 495979290871200