Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilago_20xerochloae_20[genbank_20GCA_5F001736075.1_202016-09-20] 13,661 sequences; 24,230,715 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq67 158 2e-33 seq36 152 7e-32 >seq67 Length=86059 Score = 158 bits (174), Expect = 2e-33 Identities = 370/557 (66%), Gaps = 6/557 (1%) Strand=Plus/Plus Query 49960 CATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGT 50019 || ||||| ||| ||| ||||| ||||| | || || |||||||| || |||||| Sbjct 4636 CAGGCGAAGTCGGTGTGAAGACCTTCGTCGCGTGAGATGAGCTCGTTGGAGAAGGTGAGT 4695 Query 50020 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGACCCAGAAAAGAAG 50079 |||||||| || |||||||| || ||||| || ||||| || || || || || |||||| Sbjct 4696 CCGGGCATAAGACCACGCTTCTTGAGCCAGAAGATGGAGGCGAAGGAGCCGGAGAAGAAG 4755 Query 50080 ATTCCTTCTACTGCGGCAAAGGCAACAAGTCTCTCTCCATAACTGGC---GCTGTCATGT 50136 || || || ||||||||||||||||| || | || | | |||| || ||| Sbjct 4756 ATACCCTCAACTGCGGCAAAGGCAACGAGACGTTCGGCGAAGGTGGCTTTGCGGTCGCTG 4815 Query 50137 ATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTA 50196 ||||| ||||||| |||||||||| || || || || || || | ||| | | Sbjct 4816 ATCCAACGAAGAGCCCAGTCGGCCTTCTGCTTGACGACGGGGATGGTCTCGACGGCGTCA 4875 Query 50197 AAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACATT 50256 ||||| | | | | | | || || || || ||||| | || || | Sbjct 4876 AAGAGGAATTCTCGCTGCTCAGGCTCACGAATGTAGGTGTCGATGAGGAGCGAGTAAGTC 4935 Query 50257 TCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATC 50316 || || |||||||| || || ||||| || || ||||| |||| |||||||| | | Sbjct 4936 TCGGAGTGAATGTTCTCCATCATGATCTGGAAACCATAGAAGCATCGAGCCTCGGCAGCC 4995 Query 50317 TGCACTTCTGTACAAAATCGTTCAGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCA 50376 || ||||| | || || || || | | || || || || || || || || || Sbjct 4996 TGAACTTCGGAACTGAAACGCTCGACGAGGTTCTCGTTGACGATACCATCGGAAGCAGCG 5055 Query 50377 AAAAACGCCAATACATGTTTTATAAAATGTTTTTCGTTGGGTGTTAGTTTATT---CCAA 50433 || || || | || || ||||| || |||||| | || || || ||| Sbjct 5056 AAGAAGGCGAGGACGTGGGAGATAAAGTGACGCTCGTTGTCGTTGAGCTTGTTGTCCCAG 5115 Query 50434 TCATTGATATCTTTAGATATATCTACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTT 50493 |||| || || || || | || | || || | |||||||| || ||||||||||| Sbjct 5116 TCATGGAGGTCCTTGGAAAGGTCGATCTCCTCGGCGGTCCAAAAGGAAGCCTCTGCCTTC 5175 Query 50494 TTATACATATTCCAGAT 50510 || ||||| | ||| || Sbjct 5176 TTGTACATTTGCCAAAT 5192 >seq36 Length=116313 Score = 152 bits (168), Expect = 7e-32 Identities = 636/991 (64%), Gaps = 16/991 (2%) Strand=Plus/Plus Query 79858 CGTTCGAACTCGTCTCCCCAAACATCGTCTAATCCAGGACATTCGTCAGGACACATCAAC 79917 || |||||||| || || | ||| | | || || || |||| || ||||| | | Sbjct 38672 CGCTCGAACTCTTCACCGTAGCAGTCGGCAAGACCGGGGCACTCGTTGGGGCACATGAGC 38731 Query 79918 GACCACTCTCCATCATCCTTTACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATA 79977 ||||| || || | | || || | ||||| |||||||| |||| ||| ||||| Sbjct 38732 GACCAATCACCGTTCTGCTCAACCCTCTTCATGAAGAGATCGGGAACCCAGAGAGCGTAG 38791 Query 79978 AATAGATCTCTGGTTCTATGCTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCC 80037 || || || | || | | || || || || ||||| | ||||||||| | Sbjct 38792 AAGAGTTCACGGGCACGAACTTCTTCCTTACCGTGGTTCTTGCGCAAGTCGAGGAACTCA 38851 Query 80038 ATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCCGGTCGTTTGTTTCCT 80097 | | ||| || ||||| || || | ||| ||||| | | || || || ||||| || Sbjct 38852 AAGACATCCGAGTGCCAAGGCTCAATGTAGATGGCAAAGGCACCGGGACGCTTGTTACCA 38911 Query 80098 CCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATTG 80157 ||||| || | ||| | |||||||| || | || | | ||| |||| ||||| ||| Sbjct 38912 CCCTGGTCGACGTAACGGGCGGTGTTGTTGAAGACACGAAGCATGGGAACGATACCGTTG 38971 Query 80158 GATGTACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATTACTAATTGAT-AG 80216 ||| ||||| |||| || ||| ||| | | ||||| | | | || | | Sbjct 38972 CTGACACCGTTGGTGCCGGCAATGTAGGAGCCAGTACCTCGAATGC-AGTGAATGTTCAA 39030 Query 80217 ACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGCC 80276 ||| || || || || | || ||||| | || || || | || || || ||||| Sbjct 39031 ACCAATGCCACCGGCGGTCTTGGAGATCATGGCACAGGTCTTGAGGGTGTCGTAAATGCC 39090 Query 80277 CTCTATGCTATCATCAATCATGTTAAGTAGAAAACAG--CTAGACATTTGG-TGACGACT 80333 || || ||||| ||||| ||| || |||||| | ||| | ||| || || | Sbjct 39091 GTCGATCGAGTCATCCTTCATGGTAACAAGGAAACAGGACGAGAGCTGTGGGTGGGGAGT 39150 Query 80334 AGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGACAGTAGATT 80393 | || || || || | ||| || || ||||| ||||| | |||| |||| || || Sbjct 39151 A---CCAGCGTTGAAGAGGGTTGGCGAGGCGTGAGTAAAGTACTTTTGCGACATGAGGTT 39207 Query 80394 GTACGTCTCAATAGCTGATTCTATATCCCATTGATGAATTCCTACCGCGACACGCATTAA 80453 ||||||||| || || || || ||| ||||| || || || |||||||| | Sbjct 39208 GTACGTCTCGATGGCGCTCTCGATGTCCTGGCCGTGAATACCAACAGCAACACGCATGAG 39267 Query 80454 CATGTGCTGAGGTCTTTCAACGATCTTGTTATTTATTTTCAACAAGTAAGATTTTTCCAA 80513 ||||||||| || | ||| | | |||| || || | |||||| || || | Sbjct 39268 CATGTGCTGGGGACGCTCAGCAACCTTGCCGTTGATGCGGAGCAAGTAGGAACGCTCGAG 39327 Query 80514 AGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACCGAGTTGAG 80573 ||| || || || || ||||||| ||||| || ||||| || ||| |||||| || Sbjct 39328 AGTCTTGAAGCCGAAGAAGTTGTAGTGGAAGTCGCGCTCGTAGATGATAGCCGAGTCAAG 39387 Query 80574 TTTATCCTTATATTTGTTAACTACATCCATGGTGATACTTGAAATAATCGGAGAATGTTT 80633 | ||||| | | | || || | |||| || || || || || || | Sbjct 39388 CTGGTCCTTGTGCTCCATGACGACCTTGTAGGTGGTATCGGAGATCATAGGGCTGTGCCT 39447 Query 80634 CCCATTTTTAGGATTAACATAGTTGAATAAATCCTCCATCACTTCACTAAATAGttttt- 80692 || || || || || ||||| | | | || |||| | |||| || | |||| || Sbjct 39448 GCCGTTCTTGGGGTTGACATACTCGTACAAGTCCTGGACGACTTGGCTGA--AGTTCTTG 39505 Query 80693 -ttGTTTCCTTGTGTAGATTTGAT-ACGGCTATTCTGGCGGCTAAAATGGCATAATCTGG 80750 | || |||||||| | | ||| | | ||| || | || || | | |||||| ||||| Sbjct 39506 CTAGTCTCCTTGTGCA-AGTTGCTGATGGCAATACGCGCAGCAAGGACGGCATAGTCTGG 39564 Query 80751 ATGTTGTGTAGTACAAGT-GGCTGCTATTTCGGCTGCCAGAGTGTCCAATTCTACCGTTG 80809 ||| ||| || | || ||| || | ||||| || || |||| | ||||| || | Sbjct 39565 GTGTGTTGTTGT-CTTGTAGGCGGCAGTCTCGGCAGCAAGGTTGTCAAGCTCTACGGTGG 39623 Query 80810 TTACTCCATTATATATTCCTTGGATAACCTT 80840 | || || | || || || | ||| || || Sbjct 39624 TGACACCCTCGTAGATACCGTCGATGACTTT 39654 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 718146146624040