Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilago_20xerochloae_20[genbank_20GCA_5F001736075.1_202016-09-20] 13,661 sequences; 24,230,715 total letters Query= NC_004062.1 Length=119217 Score E Sequences producing significant alignments: (Bits) Value seq23 114 1e-20 >seq23 Length=140287 Score = 114 bits (126), Expect = 1e-20 Identities = 166/229 (72%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGAC 42942 || |||||||| | || || | || | ||||||||||| || | ||||||||| ||| Sbjct 2459 CCGCCACGCAGACGCAAAACTAGGTGCAAGGTGCTCTCCTTCTGAATATTGTAATCAGAC 2400 Query 42943 AATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGC 43002 | || ||| | || ||||| ||||| || ||||| ||||| ||||| || |||| || Sbjct 2399 AGAGTTCGTCCATCCTCCAACTGTTTACCAGCAAAGATCAAACGCTGCTGGTCGGGAGGA 2340 Query 43003 ACACCTTCTTTTTCGCTG-ATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGC-CTCGA 43060 | |||||| || || ||| ||| ||||||| || ||| ||||| | ||| ||| | Sbjct 2339 ATACCTTCCTTGTC-CTGAATCTTGGCTTTGACATTGTCAATGGTGTC-CGAGCTCTCCA 2282 Query 43061 CGTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109 | || | || || ||||| || || || || || ||||| || ||||| Sbjct 2281 CCTCGAGTGTGATCGTTTTGCCAGTAAGCGTCTTGACAAAGATCTGCAT 2233 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 381306104464338