Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilago_20xerochloae_20[genbank_20GCA_5F001736075.1_202016-09-20] 13,661 sequences; 24,230,715 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq36 138 2e-27 seq67 113 6e-20 >seq36 Length=116313 Score = 138 bits (152), Expect = 2e-27 Identities = 611/957 (64%), Gaps = 14/957 (1%) Strand=Plus/Plus Query 71974 CCAGGACATTCATTCGGACACATCAATGACCACTCTCCATCATCATTTACTCGTTTCATA 72033 || || || || || || ||||| | ||||| || || | | | || | ||||| Sbjct 38705 CCGGGGCACTCGTTGGGGCACATGAGCGACCAATCACCGTTCTGCTCAACCCTCTTCATG 38764 Query 72034 AAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGCTCCTCGTTTCCT 72093 |||||||| |||| ||| ||||| || || || | || | | || || || || Sbjct 38765 AAGAGATCGGGAACCCAGAGAGCGTAGAAGAGTTCACGGGCACGAACTTCTTCCTTACCG 38824 Query 72094 GTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATG 72153 ||||| | ||||||||| | | | ||| || ||||| || || | ||| ||| Sbjct 38825 TGGTTCTTGCGCAAGTCGAGGAACTCAAAGACATCCGAGTGCCAAGGCTCAATGTAGATG 38884 Query 72154 GCCATAACTCCCGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAA 72213 || | | || || || ||||| || ||||| || | ||| | |||||||| || | Sbjct 38885 GCAAAGGCACCGGGACGCTTGTTACCACCCTGGTCGACGTAACGGGCGGTGTTGTTGAAG 38944 Query 72214 ACTCTCAACATTGGAATAATACCATTGGATGCACCATTGGTCCCGGAGATATAGCTTCCA 72273 || | | ||| |||| ||||| ||| |||| ||||| |||| || ||| ||| Sbjct 38945 ACACGAAGCATGGGAACGATACCGTTGCTGACACCGTTGGTGCCGGCAATGTAGGAGCCA 39004 Query 72274 CTGGCACGAATATTGCTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCG 72333 | | ||||| | ||| | ||| || || || || | || ||||| | || Sbjct 39005 GTACCTCGAATGCAGTGAATGTTCAAACCAATGCCACCGGCGGTCTTGGAGATCATGGCA 39064 Query 72334 CATCGTTTTAACGTATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGAAAA 72393 || || | || || || ||||| || || |||||| ||||| ||| || ||| Sbjct 39065 CAGGTCTTGAGGGTGTCGTAAATGCCGTCGATCGAGTCATCCTTCATGGTAACAAGGAAA 39124 Query 72394 CAG--CTAGACATTTGG-TGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGC 72450 ||| | ||| | ||| || || || || || || || | ||| || || ||||| Sbjct 39125 CAGGACGAGAGCTGTGGGTGGGGAGTA---CCAGCGTTGAAGAGGGTTGGCGAGGCGTGA 39181 Query 72451 GTAAACCATTTTTCAGACAGTAGATTGTACGTCTCAATAGCTGATTCTATATCCCATTGA 72510 ||||| | |||| |||| || ||||||||||| || || || || ||| Sbjct 39182 GTAAAGTACTTTTGCGACATGAGGTTGTACGTCTCGATGGCGCTCTCGATGTCCTGGCCG 39241 Query 72511 TGTATTCCTACCGCGACACGCATTAACATATGCTGAGGTCTTTCAACGATCTTGTTATTT 72570 || || || || || |||||||| | ||| ||||| || | ||| | | |||| || Sbjct 39242 TGAATACCAACAGCAACACGCATGAGCATGTGCTGGGGACGCTCAGCAACCTTGCCGTTG 39301 Query 72571 ATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCT 72630 || | ||||||||| || | ||| || || || || ||||||| ||||| Sbjct 39302 ATGCGGAGCAAGTAGGAACGCTCGAGAGTCTTGAAGCCGAAGAAGTTGTAGTGGAAGTCG 39361 Query 72631 CGTTCGTAAATAATAACCGAATTGAGTTTATCCTTATATTTGTTAACTATATCCATGGTG 72690 || ||||| || ||| |||| | || | ||||| | | | || | | |||| Sbjct 39362 CGCTCGTAGATGATAGCCGAGTCAAGCTGGTCCTTGTGCTCCATGACGACCTTGTAGGTG 39421 Query 72691 ATACTTGAAATAATCGGAGAATGTTTCCCATTTTTAGGATTAACATAGTTGAATAAATCC 72750 || || || || || || | || || || || || ||||| | | | || ||| Sbjct 39422 GTATCGGAGATCATAGGGCTGTGCCTGCCGTTCTTGGGGTTGACATACTCGTACAAGTCC 39481 Query 72751 TCCATCACTTCACTAAATAGttttt--ttGTTTCCTTGTGTAGATTTGAT-ACGGCTATT 72807 | | |||| || | |||| || | || |||||||| | | ||| | | ||| || Sbjct 39482 TGGACGACTTGGCTGA--AGTTCTTGCTAGTCTCCTTGTGCA-AGTTGCTGATGGCAATA 39538 Query 72808 CTGGCGGCTAGAATGGCATAATCTGGATGTTGTGTAGTACAAGT-GGCTGCTATTTCTGC 72866 | || || || | |||||| ||||| ||| ||| || | || ||| || | || || Sbjct 39539 CGCGCAGCAAGGACGGCATAGTCTGGGTGTGTTGTTGT-CTTGTAGGCGGCAGTCTCGGC 39597 Query 72867 TGCCAGAGTGTCCAATTCTACCGTTGTTACTCCATTATATATTCCTTGGATAACCTT 72923 || || |||| | ||||| || || || || | || || || | ||| || || Sbjct 39598 AGCAAGGTTGTCAAGCTCTACGGTGGTGACACCCTCGTAGATACCGTCGATGACTTT 39654 >seq67 Length=86059 Score = 113 bits (124), Expect = 6e-20 Identities = 361/557 (65%), Gaps = 6/557 (1%) Strand=Plus/Plus Query 42065 CATGCGAAATCGCAGTGCAGACCCTCATCTCTACTAATTAATTCGTTGGAAAACGTGAGT 42124 || ||||| ||| ||| ||||| || || | || | |||||||| || |||||| Sbjct 4636 CAGGCGAAGTCGGTGTGAAGACCTTCGTCGCGTGAGATGAGCTCGTTGGAGAAGGTGAGT 4695 Query 42125 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATAGACGCAAATGATCCAGAAAAGAAG 42184 |||||||| || |||||||| || ||||| || || || || || || || || |||||| Sbjct 4696 CCGGGCATAAGACCACGCTTCTTGAGCCAGAAGATGGAGGCGAAGGAGCCGGAGAAGAAG 4755 Query 42185 ATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGGC---ACTGTCATGT 42241 || || || ||||| |||||||||| || | || | | ||| | ||| Sbjct 4756 ATACCCTCAACTGCGGCAAAGGCAACGAGACGTTCGGCGAAGGTGGCTTTGCGGTCGCTG 4815 Query 42242 ATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTA 42301 ||||| ||||||| |||||||||| || || || || || || | ||| | | Sbjct 4816 ATCCAACGAAGAGCCCAGTCGGCCTTCTGCTTGACGACGGGGATGGTCTCGACGGCGTCA 4875 Query 42302 AAGAGATAGtttttttCATTACTATCTTTAACATATGTATCGATCAAAAGACTATACATT 42361 ||||| | | | | | | || || || || ||||| | || || | Sbjct 4876 AAGAGGAATTCTCGCTGCTCAGGCTCACGAATGTAGGTGTCGATGAGGAGCGAGTAAGTC 4935 Query 42362 TCTGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTGGCCTCGGTAACC 42421 || || |||||||| || || ||||| || || ||||| |||| ||||||| | || Sbjct 4936 TCGGAGTGAATGTTCTCCATCATGATCTGGAAACCATAGAAGCATCGAGCCTCGGCAGCC 4995 Query 42422 TGTACTTCTGTACAAAATCGTTCAGCTAAATTTTCGTTCACTATTCCGTCACTGGCTGCA 42481 || ||||| | || || || || | | || ||||| || || || || || || Sbjct 4996 TGAACTTCGGAACTGAAACGCTCGACGAGGTTCTCGTTGACGATACCATCGGAAGCAGCG 5055 Query 42482 AAAAACGCCAATACATGTTTTATAAAATATTTTTCGT--CCGGTGTTAAT-TTATTCCAA 42538 || || || | || || ||||| | |||| || || | || | ||| Sbjct 5056 AAGAAGGCGAGGACGTGGGAGATAAAGTGACGCTCGTTGTCGTTGAGCTTGTTGTCCCAG 5115 Query 42539 TCATTGATATCTTTAGATATATCTACTTCTTCTACCGTCCAAAATGATGCTTCTGCCTTT 42598 |||| || || || || | || | || || | |||||||| || || |||||||| Sbjct 5116 TCATGGAGGTCCTTGGAAAGGTCGATCTCCTCGGCGGTCCAAAAGGAAGCCTCTGCCTTC 5175 Query 42599 TTATACATATTCCAGAT 42615 || ||||| | ||| || Sbjct 5176 TTGTACATTTGCCAAAT 5192 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 671024594592360