Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilago_20xerochloae_20[genbank_20GCA_5F001736075.1_202016-09-20] 13,661 sequences; 24,230,715 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq67 214 3e-50 seq9 122 1e-22 seq36 95.1 2e-14 >seq67 Length=86059 Score = 214 bits (236), Expect = 3e-50 Identities = 394/563 (70%), Gaps = 16/563 (3%) Strand=Plus/Minus Query 125019 ATTTGGGAAATGTACAAAAAGGCTCAGGCCTCCTTTTGGACGGTCGAAGAGGTCGATCTG 125078 |||||| |||||||||| ||||| |||| ||||||||||| | ||| ||| |||| || Sbjct 5192 ATTTGGCAAATGTACAAGAAGGCAGAGGCTTCCTTTTGGACCGCCGAGGAGATCGACCTT 5133 Query 125079 TCCAAGGACCTGTACGATTGGGAGA-CTCGTTTGACTGAAACTGAGCGAGAGTTTATATC 125137 ||||||||||| | || ||||| | | | | || ||| ||||| | ||||| || Sbjct 5132 TCCAAGGACCTCCATGACTGGGACAACAAGCTCAACGACAAC-GAGCGTCACTTTATCTC 5074 Query 125138 GCACATTTTGGCCTTCTTTGCCGGCTCCGATGGAATCGTCAACGACAATCT-GTTGACAC 125196 ||| | | |||||||| || | |||||||| ||||||||||| || || || || | Sbjct 5073 CCACGTCCTCGCCTTCTTCGCTGCTTCCGATGGTATCGTCAACGAGAACCTCGTCGAG-C 5015 Query 125197 GATTCTCTCAAGA-GTTGACCATTCCAGAGGTGTCG-TGCTTTTACGGATTCCAAATCAT 125254 | ||| | || ||| | | || |||| ||| ||||| || || ||||| ||||| Sbjct 5014 GTTTCAGTTCCGAAGTTCAGGCTGCC-GAGGC-TCGATGCTTCTATGGTTTCCAGATCAT 4957 Query 125255 GATTGAGAACGTGCACTCGGAAATGTACTCTACACTGATTGACATGTACATTCGCGATCC 125314 ||| |||||| | ||||| || | ||||| || || |||| |||||||| || || Sbjct 4956 GATGGAGAACATTCACTCCGAGACTTACTCGCTCCTCATCGACACCTACATTCGTGAGCC 4897 Query 125315 ---GCAACGTAAACACATGCTCTTTAACGCAATCGACACGGTGCC-GTCTATACGTAAAA 125370 ||| || || | |||||| |||| |||| || | || ||| | | | || Sbjct 4896 TGAGCAGCGAGAATTC---CTCTTTGACGCCGTCGAGACCATCCCCGTCGTCAAGCAGAA 4840 Query 125371 AGGCTCAATGGGTGATTCGGTGGATCGATGACGACAAGTCTTCGTACGCCGACAGACTGG 125430 ||| | |||| |||| |||||| ||| ||| | | | |||||| | || | Sbjct 4839 -GGCCGACTGGGCTCTTCGTTGGATCAGCGACCGCAAAGCCACCTTCGCCGAACGTCTCG 4781 Query 125431 TGGCATTCGCCGCCGTAGAGGGCATCTTCTTTTCGGGTAGTTTTGCGGCCATCTTTTGGC 125490 | || || ||||| || ||||| |||||||| || || || || ||||||| |||| Sbjct 4780 TTGCCTTTGCCGCAGTTGAGGGTATCTTCTTCTCCGGCTCCTTCGCCTCCATCTTCTGGC 4721 Query 125491 TCAAGAAGCGCGGACTCATGCCCGGACTGACGCACAGTAACGAGTTTATATCTCGAGACG 125550 |||||||||| || || ||||||||||| || | |||||| | || || || |||| Sbjct 4720 TCAAGAAGCGTGGTCTTATGCCCGGACTCACCTTCTCCAACGAGCTCATCTCACGCGACG 4661 Query 125551 AGGGCCTACACTGTGACTTTGCC 125573 | || || ||| ||||| ||| Sbjct 4660 AAGGTCTTCACACCGACTTCGCC 4638 >seq9 Length=211508 Score = 122 bits (134), Expect = 1e-22 Identities = 264/386 (68%), Gaps = 7/386 (2%) Strand=Plus/Minus Query 69893 CTACCTCTGTTGACGACCAAGACTGTCTTTGTCAAGGGCGTCATCGAGGAGCTCTTGTGG 69952 || |||||| | || || ||| |||||| || || || |||||||||| | ||| Sbjct 210371 CTTCCTCTGCTCACAACAAAGCGTGTCTTCTTCCGCGGTGTTCTCGAGGAGCTACTCTGG 210312 Query 69953 ATGATTTCCGGATCGACCAATGCCAAAGAGCTGAGCCGA-AAGGGTGTACACATTTGGAG 70011 | || | ||| |||| | |||| ||| | | || || ||||| ||||| ||| Sbjct 210311 TTCGTTGCTGGAAAGACCGACTCCAAGCTGCTCA-CAGACAAAGGTGTGCACATCTGGGA 210253 Query 70012 CGGCAACAGTAGTCGAAGCGTTT-TGGATTCGCTCGGCTT-CACCGACAGACAAGAGGGC 70069 ||||||| | ||| | ||| | || || | || || || | ||||| ||| || Sbjct 210252 CGGCAACGGGTCACGA-GAGTTCCTTGACTCTCGAGGATTGCAGC-ACAGAAGAGAAGGT 210195 Query 70070 GATCTGGGGCCAGTGTACGGATTCCAGTGGAGGCACTCGGGCACCAAGTATGTAGACTGC 70129 |||||||| ||||| ||||| ||||| ||| | |||| ||| || | || |||||| Sbjct 210194 GATCTGGGTCCAGTCTACGGTTTCCAATGGCGTCACTTTGGCGCCGAATACAAAGACTGT 210135 Query 70130 GAGACAGACTATTCGGGTCAGGGTGTTGATCAATTGCAGACAATCATTGACACTCTCAAG 70189 || || ||||| | || || || || |||||| | | |||| |||| ||||| Sbjct 210134 GACACCGACTACACTGGCCAAGGCGTCGATCAACTTCGCGATGTCATCGACAAGATCAAG 210075 Query 70190 ACCAATCCAACAGATAGGAGGATCGTAATGTGCTCATGGAATCCTGCAGATTTGCACCAA 70249 | |||||| || ||| | || ||| | | || ||||||||||| |||| | || Sbjct 210074 AACAATCCCACCGATCGCAGAATCTTGCTCAGCGCATGGAATCCTAAAGATCTCTCCCTC 210015 Query 70250 ATGGCACTACCACCGTGTCAC-TGTT 70274 ||||| || ||||| |||||| |||| Sbjct 210014 ATGGCTCTTCCACCTTGTCACATGTT 209989 >seq36 Length=116313 Score = 95.1 bits (104), Expect = 2e-14 Identities = 146/206 (71%), Gaps = 2/206 (1%) Strand=Plus/Minus Query 98038 TCTACAAGACTGTCTGGGAGAT-TCCGACCAAGACGCTGATCGATATGGCTGCCGACAGA 98096 ||||||||||||| |||||||| ||| | ||| | | ||||| ||||| || || || Sbjct 37739 TCTACAAGACTGTTTGGGAGATCTCCCA-GAAGGCTATCATCGACATGGCCGCTGATCGA 37681 Query 98097 GGTGTCTACATTGACCAGAGTCAATCGTTCAATCTGTACGTTGCCGAGCCCACCTACAGT 98156 |||| | |||| |||| |||||| |||| | || | | | || ||| | || Sbjct 37680 GGTGCTTTCATTTGCCAGTCTCAATCCCTCAACATCCACTTGTCGGCTCCTTCCTTCGGT 37621 Query 98157 CGTATGACTTCGATACACTTTTACGCATGGAACAAGGGCCTCAAGACGGGCATGTACTAT 98216 | |||||||||| ||||| |||| ||||| ||||| |||||||| || | ||||| Sbjct 37620 CAGTTGACTTCGATGCACTTCTACGGTTGGAAGAAGGGTCTCAAGACCGGTACCTACTAC 37561 Query 98217 CTGAGAACAAAGTCGGCCACCAATGC 98242 || | || ||| | || |||| || Sbjct 37560 CTCCGTACCAAGCCAGCATCCAACGC 37535 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 740932654878360