Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilago_20xerochloae_20[genbank_20GCA_5F001736075.1_202016-09-20] 13,661 sequences; 24,230,715 total letters Query= NC_005038.1 Length=99657 Score E Sequences producing significant alignments: (Bits) Value seq23 82.4 5e-11 >seq23 Length=140287 Score = 82.4 bits (90), Expect = 5e-11 Identities = 155/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 33142 ACCGCCTCTTAACCGCAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGA 33201 |||||| | | ||||| || | ||||| || ||| || || |||||||||||||| Sbjct 2460 ACCGCCACGCAGACGCAAAACTAGGTGCAAGGTGCTCTCCTTCTGAATATTGTAATCAGA 2401 Query 33202 CAAATTGAGTTGGTCATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGG 33261 || | | || || ||||| || || ||| ||| || ||||| |||||||| | || Sbjct 2400 CAGAGTTCGTCCATCCTCCAACTGTTTACCAGCAAAGATCAAACGCTGCTGGTCGGGAGG 2341 Query 33262 TATGCCTTCTTTTTCGCTAATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAAC 33321 || ||||| || || |||| ||| || | | ||| ||||| | | || Sbjct 2340 AATACCTTCCTTGTCCTGAATCTTGGCTTTGACATTGTCAATGGTGTCCGAGCTCTCCAC 2281 Query 33322 GTCCAGAGTTATCGTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCAT 33369 || || || |||||||| || ||||| || || || || || ||||| Sbjct 2280 CTCGAGTGTGATCGTTTTGCCAGTAAGCGTCTTGACAAAGATCTGCAT 2233 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 318724525621578