Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilago_20xerochloae_20[genbank_20GCA_5F001736075.1_202016-09-20] 13,661 sequences; 24,230,715 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq23 141 2e-28 seq53 116 9e-21 >seq23 Length=140287 Score = 141 bits (156), Expect = 2e-28 Identities = 159/210 (76%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 104351 ACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCT 104410 ||||| || || || || ||||||||||| || ||||| ||||||| || || || Sbjct 2441 ACTAGGTGCAAGGTGCTCTCCTTCTGAATATTGTAATCAGACAGAGTTCGTCCATCCTCC 2382 Query 104411 AGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGA 104470 | ||||| |||||||| || | | ||| || || ||||| || ||||| || |||||| Sbjct 2381 AACTGTTTACCAGCAAAGATCAAACGCTGCTGGTCGGGAGGAATACCTTCCTTGTCCTGA 2322 Query 104471 ATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGT-TCTACCTCTAGTGTAATAGTCTT 104529 ||||| ||||| ||||| || | ||| || | || | || ||||| ||||| || || || Sbjct 2321 ATCTTGGCTTTGACATTGTCAATGGTGTC-CGAGCTCTCCACCTCGAGTGTGATCGTTTT 2263 Query 104530 ACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 |||||||| || || ||||| |||||||| Sbjct 2262 GCCAGTAAGCGTCTTGACAAAGATCTGCAT 2233 Score = 131 bits (144), Expect = 4e-25 Identities = 147/197 (75%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 || || || || || || || ||||| || ||||||| || || || || || ||||| Sbjct 1745 GTCGACTCCTTTTGGATGTTGTAGTCCGAAAGAGTTCGTCCATCCTCAAGCTGCTTTCCG 1686 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 |||||||| || | ||| ||||| ||||| || || || || ||||||||||| || || Sbjct 1685 GCAAAAATGAGACGCTGCTGATCGGGAGGGATCCCCTCCTTGTCCTGAATCTTGGCCTTG 1626 Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542 || || || | ||| ||| || || ||||| || || || |||||||| || || || Sbjct 1625 ACGTTGTCAATGGTGTCGGAAGACTCAACCTCGAGGGTGATGGTCTTACCGGTCAGAGTC 1566 Query 104543 TTTACAAATATCTGCAT 104559 ||||| || |||||||| Sbjct 1565 TTTACGAAGATCTGCAT 1549 Score = 116 bits (128), Expect = 9e-21 Identities = 155/213 (73%), Gaps = 2/213 (1%) Strand=Plus/Minus Query 104348 AGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCT 104407 || || ||||| || || ||| ||||| || || ||||| || || |||| |||||| Sbjct 1988 AGGACGAGATGCAAGGTGCTTTCCTTCTGGATGTTGTAGTCCGAGAGGGTTCGGCCGTCT 1929 Query 104408 TCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCC 104467 || || || ||||||||||| || || | ||| || ||||| || || ||||| || ||| Sbjct 1928 TCGAGCTGCTTTCCAGCAAAGATAAGACGCTGCTGGTCAGGGGGAATGCCTTCCTTGTCC 1869 Query 104468 TGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGG-TTCTACCTCTAGTGTAATAGT 104526 || ||||| || || || || || | || || | ||| || || || || ||||| || Sbjct 1868 TGGATCTTGGCCTTAACGTTGTCGATAGTGTC-CGAGGACTCGACTTCGAGCGTAATGGT 1810 Query 104527 CTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 ||| || || | || || || || |||||||| Sbjct 1809 CTTGCCGGTCAAGGTCTTGACGAAAATCTGCAT 1777 >seq53 Length=94643 Score = 116 bits (128), Expect = 9e-21 Identities = 155/213 (73%), Gaps = 2/213 (1%) Strand=Plus/Plus Query 104348 AGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCT 104407 || || ||||| || || || || |||||||| || ||||| || || || | || ||| Sbjct 56337 AGGACAAGATGCAAGGTGGACTCCTTCTGAATGTTGTAGTCGGAAAGGGTACGGCCATCT 56396 Query 104408 TCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCC 104467 || || || || || ||||| || || | ||| || |||||||| || || || || ||| Sbjct 56397 TCAAGCTGCTTGCCTGCAAAGATAAGACGCTGCTGGTCAGGAGGAATGCCCTCCTTGTCC 56456 Query 104468 TGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGG-TTCTACCTCTAGTGTAATAGT 104526 |||||||| || || || || || | || || | ||| || || || || ||||| || Sbjct 56457 TGAATCTTGGCCTTGACGTTGTCGATAGTGTC-CGAGGACTCGACTTCGAGCGTAATGGT 56515 Query 104527 CTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 ||| || || | || || ||||| |||||||| Sbjct 56516 CTTGCCGGTCAAAGTCTTGACAAAGATCTGCAT 56548 Score = 116 bits (128), Expect = 9e-21 Identities = 146/198 (74%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 || || || ||||| || || ||||| || || || | || ||||| || || || ||| Sbjct 56580 GTGGACTCCTTCTGGATGTTGTAGTCCGAGAGGGTGCGGCCATCTTCGAGCTGCTTACCA 56639 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 || || || || | ||| ||||| || || || ||||| || ||||||||||| || || Sbjct 56640 GCGAAGATGAGTCGCTGCTGATCGGGTGGGATGCCTTCCTTGTCCTGAATCTTGGCCTTG 56699 Query 104483 ACATTTTCTACGGTATCGCTAGG-TTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGT 104541 ||||| || | ||| || | ||| || ||||| || || || ||||| || || || || Sbjct 56700 ACATTGTCGATGGTGTC-CGAGGACTCAACCTCGAGGGTGATGGTCTTGCCGGTGAGGGT 56758 Query 104542 TTTTACAAATATCTGCAT 104559 || ||||| |||||||| Sbjct 56759 CTTGACAAAGATCTGCAT 56776 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1151196868938988