Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilago_20xerochloae_20[genbank_20GCA_5F001736075.1_202016-09-20] 13,661 sequences; 24,230,715 total letters Query= NC_005839.2 Length=131680 Score E Sequences producing significant alignments: (Bits) Value seq52 102 7e-17 seq23 100 2e-16 seq53 84.2 2e-11 >seq52 Length=95535 Score = 102 bits (112), Expect = 7e-17 Identities = 149/209 (71%), Gaps = 4/209 (2%) Strand=Plus/Plus Query 48524 TGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCCAGCTGC 48583 ||||| ||| ||||| || |||||||| || | | || | || || |||||| Sbjct 17647 TGAAGGGTGGATTCCTTCTGGATGTTGTAGTCCGAGAGGGTACGACCATCTTCGAGCTGC 17706 Query 48584 TTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTTC 48643 |||||| || | || | |||||||||||| || | || |||||||||| || || Sbjct 17707 TTACCGGCGAAGATGAGACGCTGCTGATCAGGGGGAATACCTTCCTTGTCCTGGATCTTG 17766 Query 48644 TGCTTGA--TAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGG 48701 ||||| | | || ||||| || | |||||| ||||| || ||||| ||||| | Sbjct 17767 GCCTTGACGTTGTCG--ATGGTGTCCGAAGACTCGACCTCGAGGGTGATGGTCTTACCCG 17824 Query 48702 TGAGAGTTTTCACAAAAATCTGCATCGTG 48730 |||| ||||| ||||| ||||||||| || Sbjct 17825 TGAGGGTTTTAACAAAGATCTGCATCTTG 17853 >seq23 Length=140287 Score = 100 bits (110), Expect = 2e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 48499 ACCTCCGCGCAACCTTAACACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGC 48558 ||| || |||| | || |||| || | ||||||||||| ||||| |||||||||| Sbjct 2460 ACCGCCACGCAGACGCAAAACTAGGTGCAAGGTGCTCTCCTTCTGAATATTGTAATCAGA 2401 Query 48559 CAATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGG 48618 || ||| | ||||||| ||| ||||| | | || ||||||||||| || || Sbjct 2400 CAGAGTTCGTCCATCCTCCAACTGTTTACCAGCAAAGATCAAACGCTGCTGGTCGGGAGG 2341 Query 48619 CACACTTTCCTTGTCCATAATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGT 48678 | || |||||||||| ||| || |||| | | ||||| || | |||| Sbjct 2340 AATACCTTCCTTGTCCTGAATCTTGGCTTTGACATTGTCAATGGTGTCCGAGCTCTCCAC 2281 Query 48679 CTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCACAAAAATCTGCAT 48726 ||||| ||| || ||||| || || || || || ||||| |||||||| Sbjct 2280 CTCGAGTGTGATCGTTTTGCCAGTAAGCGTCTTGACAAAGATCTGCAT 2233 Score = 98.7 bits (108), Expect = 8e-16 Identities = 137/192 (71%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 48535 CTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTA 48594 ||||||||| |||||||| || | | ||| | ||||| |||||||| ||| | | Sbjct 1740 CTCCTTTTGGATGTTGTAGTCCGAAAGAGTTCGTCCATCCTCAAGCTGCTTTCCGGCAAA 1681 Query 48595 AATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTTCTGCTTGATAGA 48654 ||| | |||||||||||| || | | ||||||||| ||| || ||||| Sbjct 1680 AATGAGACGCTGCTGATCGGGAGGGATCCCCTCCTTGTCCTGAATCTTGGCCTTGACGTT 1621 Query 48655 CGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCAC 48714 | ||||| |||| |||||| ||||| || ||||| |||||||| ||||| || || Sbjct 1620 GTCAATGGTGTCGGAAGACTCAACCTCGAGGGTGATGGTCTTACCGGTCAGAGTCTTTAC 1561 Query 48715 AAAAATCTGCAT 48726 || |||||||| Sbjct 1560 GAAGATCTGCAT 1549 >seq53 Length=94643 Score = 84.2 bits (92), Expect = 2e-11 Identities = 141/204 (69%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 48524 TGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCCAGCTGC 48583 || || ||| |||||| || |||||||| || | | || | || || |||||| Sbjct 56574 TGGAGGGTGGACTCCTTCTGGATGTTGTAGTCCGAGAGGGTGCGGCCATCTTCGAGCTGC 56633 Query 48584 TTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTTC 48643 ||||| || | || | ||||||||||| || | | |||||||||| ||| || Sbjct 56634 TTACCAGCGAAGATGAGTCGCTGCTGATCGGGTGGGATGCCTTCCTTGTCCTGAATCTTG 56693 Query 48644 TGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGTG 48703 ||||| | | ||||| || | ||||| ||||| || ||||| || |||||| Sbjct 56694 GCCTTGACATTGTCGATGGTGTCCGAGGACTCAACCTCGAGGGTGATGGTCTTGCCGGTG 56753 Query 48704 AGAGTTTTCACAAAAATCTGCATC 48727 || || || ||||| ||||||||| Sbjct 56754 AGGGTCTTGACAAAGATCTGCATC 56777 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 421181064439661