Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilago_20xerochloae_20[genbank_20GCA_5F001736075.1_202016-09-20] 13,661 sequences; 24,230,715 total letters Query= NC_006998.1 Length=194711 Score E Sequences producing significant alignments: (Bits) Value seq36 161 1e-34 seq67 143 3e-29 >seq36 Length=116313 Score = 161 bits (178), Expect = 1e-34 Identities = 623/968 (64%), Gaps = 12/968 (1%) Strand=Plus/Plus Query 62898 GATGCCAGATTACAAACGGCTACCTCATTAGCATCCGCATATTGTATTATCTCAGTGCAA 62957 || || || || ||||| || ||||||| | | | || | || ||||||||||| Sbjct 38435 GAGGCAAGGTTGCAAACAGCAACCTCATCGGGAGCACTGTACTCGATGATCTCAGTGCAC 38494 Query 62958 AGATTACTACACTTGATAGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCC 63017 | || ||||||||||| || | || | || || ||| ||| || ||| Sbjct 38495 AAGTTGGAGCACTTGATAGTACCGAGGTTCTTCTGGTTGGACTTGCGGTTGGCAGCGTCC 38554 Query 63018 TTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGACG 63077 || || || ||||| || |||| || || |||| || || | || || | ||||| | Sbjct 38555 TTGTAGAGGATGAAGGGGTTACCGGTCTCGGTCTGCGACTCGAGGATGGCGTACCAGA-G 38613 Query 63078 ACTC-GAGCCTTTATTATA-GATTTGTATCTCCTTTCTCTTTCGTATAGTGTATACAATC 63135 || ||||||| | | | |||| | | | ||| ||||| | || | | Sbjct 38614 CTTCTGAGCCTTGACGGTGCGCTTTG-AGCGACCTTCGGCCTCGTAACGCTCGTAGAGAC 38672 Query 63136 GTTCGAACTCGTCTCCCCAAACATTGTCCAATCCAGGACATTCATCCGGACACATCAACG 63195 | |||||||| || || | | | | | || || || || | || ||||| | || Sbjct 38673 GCTCGAACTCTTCACCGTAGCAGTCGGCAAGACCGGGGCACTCGTTGGGGCACATGAGCG 38732 Query 63196 ACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAA 63255 |||| || |||| | || || | ||||| |||||||| |||| ||| ||||| | Sbjct 38733 ACCAATCACCGTTCTGCTCAACCCTCTTCATGAAGAGATCGGGAACCCAGAGAGCGTAGA 38792 Query 63256 ATAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCA 63315 | || || | || | | ||| || || || ||||| | ||||||||| | | Sbjct 38793 AGAGTTCACGGGCACGAACTTCTTCCTTACCGTGGTTCTTGCGCAAGTCGAGGAACTCAA 38852 Query 63316 TAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTTCCTC 63375 | ||| || ||||| || || | ||| ||||| | | || || || ||||| || | Sbjct 38853 AGACATCCGAGTGCCAAGGCTCAATGTAGATGGCAAAGGCACCGGGACGCTTGTTACCAC 38912 Query 63376 CCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCGTTTG 63435 |||| || | ||| | |||||||| || | || | | ||| |||| |||||||| Sbjct 38913 CCTGGTCGACGTAACGGGCGGTGTTGTTGAAGACACGAAGCATGGGAACGATACCGTTGC 38972 Query 63436 ATATACCATTGGTACCGGAGATATAGCTTCCACTGGCACGAATATTACTAATTGAT-AGA 63494 | ||| ||||| |||| || ||| ||| | | ||||| | | | || | | | Sbjct 38973 TGACACCGTTGGTGCCGGCAATGTAGGAGCCAGTACCTCGAATGC-AGTGAATGTTCAAA 39031 Query 63495 CCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTGTCATAGATACCC 63554 || || || || || | || ||||| | || || || | ||||| || || || Sbjct 39032 CCAATGCCACCGGCGGTCTTGGAGATCATGGCACAGGTCTTGAGGGTGTCGTAAATGCCG 39091 Query 63555 TCTATGCTATCATCGATCATGTTAAGTAGAAAACAG--CTAGACATTTGG-TGACGACTA 63611 || || ||||| ||||| ||| || |||||| | ||| | ||| || || || Sbjct 39092 TCGATCGAGTCATCCTTCATGGTAACAAGGAAACAGGACGAGAGCTGTGGGTGGGGAGTA 39151 Query 63612 GTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTG 63671 || || || || | ||| || || ||||| ||||| | |||| || | || ||| Sbjct 39152 ---CCAGCGTTGAAGAGGGTTGGCGAGGCGTGAGTAAAGTACTTTTGCGACATGAGGTTG 39208 Query 63672 TACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAAC 63731 |||||||| || || || || ||| ||||| || || || |||||||| | | Sbjct 39209 TACGTCTCGATGGCGCTCTCGATGTCCTGGCCGTGAATACCAACAGCAACACGCATGAGC 39268 Query 63732 ATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAAA 63791 |||||||| || | ||| | | |||| ||| || | ||||||||| || | | Sbjct 39269 ATGTGCTGGGGACGCTCAGCAACCTTGCCGTTGATGCGGAGCAAGTAGGAACGCTCGAGA 39328 Query 63792 GTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACCGAGTTGAGT 63851 || || || || || ||||||| ||||| || ||||| || ||| |||||| || Sbjct 39329 GTCTTGAAGCCGAAGAAGTTGTAGTGGAAGTCGCGCTCGTAGATGATAGCCGAGTCAAGC 39388 Query 63852 TTATCCTT 63859 | ||||| Sbjct 39389 TGGTCCTT 39396 >seq67 Length=86059 Score = 143 bits (158), Expect = 3e-29 Identities = 369/558 (66%), Gaps = 8/558 (1%) Strand=Plus/Plus Query 33304 CATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGT 33363 || ||||| ||| ||| ||||| ||||| | || || |||||||| || |||||| Sbjct 4636 CAGGCGAAGTCGGTGTGAAGACCTTCGTCGCGTGAGATGAGCTCGTTGGAGAAGGTGAGT 4695 Query 33364 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCAGAAAAGAAG 33423 |||||||| || |||||||| || ||||| || ||||| ||||| || || || |||||| Sbjct 4696 CCGGGCATAAGACCACGCTTCTTGAGCCAGAAGATGGAGGCGAAGGAGCCGGAGAAGAAG 4755 Query 33424 ATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATAACCGGC---GCTGTCATGT 33480 || || || ||||| |||||||||| || | || | | ||| || ||| Sbjct 4756 ATACCCTCAACTGCGGCAAAGGCAACGAGACGTTCGGCGAAGGTGGCTTTGCGGTCGCTG 4815 Query 33481 ATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTA 33540 ||||| ||||||| |||||||||| || || || || || || | ||| | | Sbjct 4816 ATCCAACGAAGAGCCCAGTCGGCCTTCTGCTTGACGACGGGGATGGTCTCGACGGCGTCA 4875 Query 33541 AAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACATT 33600 ||||| | | | | | | || || || || ||||| | || || | Sbjct 4876 AAGAGGAATTCTCGCTGCTCAGGCTCACGAATGTAGGTGTCGATGAGGAGCGAGTAAGTC 4935 Query 33601 TCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATC 33660 || || |||||||| || || ||||| || || ||||| |||| |||||||| | | Sbjct 4936 TCGGAGTGAATGTTCTCCATCATGATCTGGAAACCATAGAAGCATCGAGCCTCGGCAGCC 4995 Query 33661 TGTACTTCTGTACAAAATCGTTCCGCCAAATTTTCATTCACTATTCCGTCACTGGCTGCA 33720 || ||||| | || || || || | | || || || || || || || || || Sbjct 4996 TGAACTTCGGAACTGAAACGCTCGACGAGGTTCTCGTTGACGATACCATCGGAAGCAGCG 5055 Query 33721 AAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTT-AGTTTATT---CCA 33776 || || || | || || ||||| | |||| || ||| || || || ||| Sbjct 5056 AAGAAGGCGAGGACGTGGGAGATAAAGTGACGCTCGT-TGTCGTTGAGCTTGTTGTCCCA 5114 Query 33777 ATCATTGATATCTTTAGATATATCTACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTT 33836 |||| || || || || | || | || || | |||||||| || ||||||||||| Sbjct 5115 GTCATGGAGGTCCTTGGAAAGGTCGATCTCCTCGGCGGTCCAAAAGGAAGCCTCTGCCTT 5174 Query 33837 TTTATACATGTTCCAGAT 33854 || ||||| | ||| || Sbjct 5175 CTTGTACATTTGCCAAAT 5192 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622840823978760