Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilago_20xerochloae_20[genbank_20GCA_5F001736075.1_202016-09-20] 13,661 sequences; 24,230,715 total letters Query= NC_007151.1 Length=149622 Score E Sequences producing significant alignments: (Bits) Value seq52 93.3 4e-14 seq36 87.8 2e-12 seq53 86.0 6e-12 >seq52 Length=95535 Score = 93.3 bits (102), Expect = 4e-14 Identities = 150/216 (69%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 26765 CAAAATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATC 26824 ||| ||||| | ||||| ||||| | || || || | |||||| |||| | || || Sbjct 17853 CAAGATGCAGATCTTTGTTAAAACCCTCACGGGTAAGACCATCACCCTCGAGGTCGAGTC 17794 Query 26825 AAACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGA 26884 ||||||||||| | ||||| ||||| ||||| ||||| || || || || Sbjct 17793 TTCGGACACCATCGACAACGTCAAGGCCAAGATCCAGGACAAGGAAGGTATTCCCCCTGA 17734 Query 26885 TCAACAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTA 26944 ||| || | ||||| | || ||| || || |||||||||| | | | | || ||||| Sbjct 17733 TCAGCAGCGTCTCATCTTCGCCGGTAAGCAGCTCGAAGATGGTCGTACCCTCTCGGACTA 17674 Query 26945 TAACATTCAAAAAGAATCTACTATCCATCTGGTCCT 26980 ||||| || || ||||| || | || || ||||| Sbjct 17673 CAACATCCAGAAGGAATCCACCCTTCACCTCGTCCT 17638 >seq36 Length=116313 Score = 87.8 bits (96), Expect = 2e-12 Identities = 100/132 (76%), Gaps = 2/132 (2%) Strand=Plus/Plus Query 148242 CCTTCGGCCTCGTAATTTTCGTAAAGGTCCTCGAATTCTTGGCCATAGCAATCGTTTAAA 148301 ||||||||||||||| ||||| || |||||| |||| || ||||| ||| | | Sbjct 38645 CCTTCGGCCTCGTAACGCTCGTAGAGACGCTCGAACTCTTCACCGTAGCAGTCGGCAAGA 38704 Query 148302 CCGGGACACTCGTCGGGGCACATCAATGACC-ATTTCCCTCCTGTCTTTACCCTCTTCAT 148360 ||||| ||||||| ||||||||| | |||| || || | ||| || ||||||||||| Sbjct 38705 CCGGGGCACTCGTTGGGGCACATGAGCGACCAATCACCGTTCTG-CTCAACCCTCTTCAT 38763 Query 148361 AAACAGATCAGG 148372 || ||||| || Sbjct 38764 GAAGAGATCGGG 38775 >seq53 Length=94643 Score = 86.0 bits (94), Expect = 6e-12 Identities = 146/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 26769 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAAC 26828 ||||| | ||||| || || | || || || | |||||| |||| | || || Sbjct 56776 ATGCAGATCTTTGTCAAGACCCTCACCGGCAAGACCATCACCCTCGAGGTTGAGTCCTCG 56717 Query 26829 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAA 26888 ||||||||||| | ||||| |||||| ||||| ||||| || || |||||||| Sbjct 56716 GACACCATCGACAATGTCAAGGCCAAGATTCAGGACAAGGAAGGCATCCCACCCGATCAG 56657 Query 26889 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAAC 26948 || ||||||| | || || || || |||||||||| | | | || ||||| ||| Sbjct 56656 CAGCGACTCATCTTCGCTGGTAAGCAGCTCGAAGATGGCCGCACCCTCTCGGACTACAAC 56597 Query 26949 ATTCAAAAAGAATCTACTATCCATCTGGTCCT 26980 || || || || || || |||| || || || Sbjct 56596 ATCCAGAAGGAGTCCACCCTCCACCTCGTTCT 56565 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 478580662411920