Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilago_20xerochloae_20[genbank_20GCA_5F001736075.1_202016-09-20] 13,661 sequences; 24,230,715 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq36 354 2e-92 >seq36 Length=116313 Score = 354 bits (392), Expect = 2e-92 Identities = 1161/1787 (65%), Gaps = 28/1787 (2%) Strand=Plus/Minus Query 363391 TTCGGATATAAGACGATGGAGAAATCCTACCTATCTCGTATCAATGGTGATATTGTTGAA 363450 ||||| | ||||| | ||| |||||| | || ||||| || | ||| ||| Sbjct 39342 TTCGGCTTCAAGACTCTCGAGCGTTCCTACTTGCTCCGCATCAACGGCAAGGTTGCTGAG 39283 Query 363451 CGCCCGCAGCATATGTTAATGCGTGTTGCTATTGGTATCCATTGCCCGGATGTTGATGCC 363510 || || ||||| ||| | |||||||||||| ||||||| || ||| ||| | || | Sbjct 39282 CGTCCCCAGCACATGCTCATGCGTGTTGCTGTTGGTATTCACGGCCAGGACATCGAGAGC 39223 Query 363511 GCGATTGAAACATATAAGCTTCTAAGT-GCTCGTGTA-TTCACGCACGCCACGCCAACAA 363568 || || || || || || || | || || ||| || || |||||| ||||||| Sbjct 39222 GCCATCGAGACGTACAACCTCAT--GTCGCAAAAGTACTTTACTCACGCCTCGCCAACCC 39165 Query 363569 TGTACAATGCTGGAACTCGTAATCCACAGATGTCTTCTTGCTTTCTTCTAAAAATGAAGG 363628 | | ||| ||||| |||| | |||||| | || || || || ||| | | ||||||| Sbjct 39164 TCTTCAACGCTGGTACTCCCCACCCACAGCTCTCGTCCTGTTTCCTTGTTACCATGAAGG 39105 Query 363629 ACGATTCCATCGAGGGTATCTTTGACACACTTAAGAATTGTGCTCTTATTTCCAAGAATG 363688 | || || ||||| || || | ||||| || |||| ||||| | || ||||||| | Sbjct 39104 ATGACTCGATCGACGGCATTTACGACACCCTCAAGACCTGTGCCATGATCTCCAAGACCG 39045 Query 363689 CAGGCGGAATTGGTGTATCGATCCACAATGTTCGTGC-ACAGAACAGTTACATTCGCGGC 363747 | || || |||||| | || ||| |||| | || | | |||||| |||| Sbjct 39044 CCGGTGGCATTGGTTTGAACATTCACTGCATTCGAGGTACTGG-CTCCTACATTGCCGGC 38986 Query 363748 ACAGGGGGATACTCGAATGGGCTGGTTCCCATGCTTCGTGTGTTTGACAATACTGCGAGG 363807 || || | || || | ||||||||||||||||| || |||| || || | Sbjct 38985 ACCAACGGTGTCAGCAACGGTATCGTTCCCATGCTTCGTGTCTTCAACAACACCGCCCGT 38926 Query 363808 TACGTCGACCAGGGTGGAGGAAAGCGCAAAGGGGCGTTTGCTATGTATCTCGAGCCTCAT 363867 ||||||||||||||||| ||||| || || ||||| || || | |||||| Sbjct 38925 TACGTCGACCAGGGTGGTAACAAGCGTCCCGGTGCCTTTGCCATCTACATTGAGCCTTGG 38866 Query 363868 CATGCCGATATTTTTGAGTTTCTTGAGCTCCGGAAAAACACGGGAAAAGAGGAATTGCGT 363927 || | ||| | |||||||| || || | || || ||| || || || ||| | ||| Sbjct 38865 CACTCGGATGTCTTTGAGTTCCTCGACTTGCGCAAGAACCACGGTAAGGAAGAAGTTCGT 38806 Query 363928 GCACGTGATCTGTTCTATGCACTTTGGGTTTCTGACCATTTTATGAAGCGCGTGGAGGCA 363987 || ||||| || ||||| || || |||||| | || | || |||||| | || || ||| Sbjct 38805 GCCCGTGAACTCTTCTACGCTCTCTGGGTTCCCGATCTCTTCATGAAGAGGGTTGA-GCA 38747 Query 363988 GGTAAG-AATTGGTCACTCTTTTGCCCACACGAATGTCCAGGTCTTTCCGATGTATGGGG 364046 | | ||||||| ||| | ||||| |||| || || |||||| |||| | || Sbjct 38746 GAACGGTGATTGGTCGCTCATGTGCCCCAACGAGTGCCCCGGTCTTGCCGACTGCTACGG 38687 Query 364047 TGACGACTATGTTGCTCTATACGAAAAGTATGAATCGGAGGGAAAGGCTCGTAAG---AC 364103 ||| || | | ||| ||||| || || | || || |||| ||| || Sbjct 38686 TGAAGAGTTCGAGCGTCTCTACGAGCGTTACGAGGCCGAAGG--TCGCTC-AAAGCGCAC 38630 Query 364104 AATTCCCGCACAGAAGCTATGGTTTGCCATCATGGATTCGCAGATTGAGACAGGAACACC 364163 | || |||||||| |||| |||||| | || ||||||| ||||| || | || Sbjct 38629 CGTCAAGGCTCAGAAGCTCTGGTACGCCATCCTCGAGTCGCAGACCGAGACCGGTAACCC 38570 Query 364164 CTATATGTTGTACAAAGATTCGTGCAACCGCAAGTCCAACCAGCAGCACCTTGGTACAAT 364223 || || | ||||| || | ||||||||||||||||||| || |||| ||||| || Sbjct 38569 CTTCATCCTCTACAAGGACGCTGCCAACCGCAAGTCCAACCAGAAGAACCTCGGTACTAT 38510 Query 364224 TCAGCAGAGCAACCTATGTACCGAGATTATTGAATACACCGCTCCCGACGAGACTGCCGT 364283 || |||| | || || ||||| || || |||| |||||||| ||| ||| || Sbjct 38509 CAAGTGCTCCAACTTGTGCACTGAGATCATCGAGTACAGTGCTCCCGATGAGGTTGCTGT 38450 Query 364284 ATGTAACCTTGCGTCGATCGCGCTTCCGGCGTTTGTAAAAGATGGTAC------TTTTGA 364337 || |||||||| || ||||| ||||| | || | | | ||| | || Sbjct 38449 TTGCAACCTTGCCTCCATCGCTCTTCCCACCTTCATCGACCCCGTTACCAAGGTCTACGA 38390 Query 364338 CCACCAGCATCTTTATGACGTAACCTATCATGCTACTTGCA--ATCTCG-ACAAGGTTAT 364394 | | ||| | | | || || || | |||| |||| | || | |||| | || Sbjct 38389 CTTCAAGCGTTTGCACGAGGTTGCC---AAGGCTATCTGCAAGAACTTGAACAAAATCAT 38333 Query 364395 CGACAAGAATTATTATCCAATTCCTGAAGCCGAGCGTTCTAATATGCGTCATCGCCCGAT 364454 ||| | || || || || || || || |||||||| |||||||| ||||| || Sbjct 38332 CGATATCAACTACTACCCTGTTGAGGAGGCTCGTCGTTCTAACATGCGTCACCGCCCCAT 38273 Query 364455 TGGTCTTGGTGTACAGGGCCTCGCTGACGTTTTTATGATGCTCAAGATGGCATTTGATTC 364514 |||| | ||||| ||||| ||||| || | || ||||| | || ||||| || Sbjct 38272 TGGTATCGGTGTCCAGGGTCTCGCCGATGCCTTCATGATCATGGGTTACGCCTTTGAGTC 38213 Query 364515 GCCTGACGCTCGTGTTCTAAATAAGGAGATCTTTGAAACAATGTATTTTGCCGCAAT-GA 364573 ||| || |||||| | || ||||||| || || || || ||||| | || Sbjct 38212 GCCCGAGGCTCGTCGCTTGAACGTCCAGATCTTCGAGACCATCTACCACGCCGCTCTCGA 38153 Query 364574 CTGCTTCGTGTGATTTGGCAAAAACCAAGGGAAAGTACTCTACTTATGAGGGGTCCCCTC 364633 | ||||| || ||||| | | || | ||| || || | || |||||| Sbjct 38152 GCG-ATCGTGCGAGTTGGCCCAGGAGCATGGCACCTACGAGACCTACGCCGGTTCCCCTG 38094 Query 364634 TTTCGCAGGGAAAATTCCAGTTTGATCTATGGAATGTCACGCCATCTGTCCGATGGAACT 364693 || ||||| || |||||| || | ||| ||| || || || | | ||| ||| Sbjct 38093 CCTCCCAGGGTGAACTCCAGTACGACATGTGGGGTGTTACCCCTTCCGATCTTTGGGACT 38034 Query 364694 GGGATACGCTACGTTCCAACGTTAAGAAGCATGGTACTCGCAACTCCCTCGTTACAGCGC 364753 ||| | |||| |||| | ||||| ||| ||||||||| ||| | || | Sbjct 38033 GGGCTTCGCTCAAGGCCAAGATCGCCAAGCACGGTCTTCGCAACTCGCTCTTGCTCGCTC 37974 Query 364754 CCATGCCCACGGCTTCTACTGCACAGATCCTCGGAAACAACGAGTGCTTCGAACCGTTTA 364813 ||||||| || || || || |||||| | || |||||| |||||||| || | | Sbjct 37973 CCATGCCTACCGCATCCACAAGTCAGATCTTGGGTTTCAACGAATGCTTCGAGCCCTACA 37914 Query 364814 CAAGCAATCTTTATTCACGCCGGGTTCTTTCCGGAGAATTTCCGGTAGTTAATAAGTACC 364873 | ||| | || || || || || ||| | || ||||| | ||| || || | Sbjct 37913 CCTCCAACATCTACTCTCGTCGTGTCCTTGCTGGTGAATTCCAGGTCGTCAACCCTTGGT 37854 Query 364874 TAGTCAAGGATCTTTCCGACCGCGGGCTGTGGGGTGACAGCATGAAGAACTATATCATCG 364933 | || || || ||| | || ||||| |||| |||||||||| ||| |||| Sbjct 37853 TGCTCCGCGAACTCGTCGAGCAAGGATTGTGGAACGACACCATGAAGAACCGTATTATCG 37794 Query 364934 CCGCTAATGGTTCTGTGCAGAACATTCCAGGATTTCCAGAAGATCTGAAGCCTATTTACA 364993 | |||||| | |||||| |||| || |||| || | | ||| | |||| Sbjct 37793 CTCACGGTGGTTCCATCCAGAACGTTCCTGGTATTCCTGACCGTATCAAGAAGCTCTACA 37734 Query 364994 AAACCGTATGGGAAATTTCCATGCGAACTCTCATTGATATGGCGGCCGATCGCGGTGCTT 365053 | || || ||||| || ||| | || |||| || ||||| || ||||| ||||||| Sbjct 37733 AGACTGTTTGGGAGATCTCCCAGAAGGCTATCATCGACATGGCCGCTGATCGAGGTGCTT 37674 Query 365054 TTATCTGTCAGAGCCAGTCGTTTAACGTATTCATGACTCAGCCAACCTCCGCCAAGCTTA 365113 | || || ||| || || | ||| | | || | || ||| || || | | Sbjct 37673 TCATTTGCCAGTCTCAATCCCTCAACATCCACTTGTCGGCTCCTTCCTTCGGTCAGTTGA 37614 Query 365114 CATCCATGCATTTCTACGGGTGGAAATCCGGTCTTAAGACAGGTGCC 365160 | || ||||| |||||||| ||||| ||||| ||||| ||| || Sbjct 37613 CTTCGATGCACTTCTACGGTTGGAAGAAGGGTCTCAAGACCGGTACC 37567 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1303125471982902