Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilago_20xerochloae_20[genbank_20GCA_5F001736075.1_202016-09-20] 13,661 sequences; 24,230,715 total letters Query= NC_007383.1 Length=134394 Score E Sequences producing significant alignments: (Bits) Value seq53 95.1 1e-14 seq52 89.7 4e-13 >seq53 Length=94643 Score = 95.1 bits (104), Expect = 1e-14 Identities = 139/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 ||||| | ||||| || || | || || || | || ||| |||| || ||| || Sbjct 56776 ATGCAGATCTTTGTCAAGACCCTCACCGGCAAGACCATCACCCTCGAGGTTGAGTCCTCG 56717 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 ||||||||||| | ||||| |||||| ||||| |||||||| || |||||||| Sbjct 56716 GACACCATCGACAATGTCAAGGCCAAGATTCAGGACAAGGAAGGCATCCCACCCGATCAG 56657 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 ||| |||| || | || || ||||| |||||||||| | | | | || || || ||| Sbjct 56656 CAGCGACTCATCTTCGCTGGTAAGCAGCTCGAAGATGGCCGCACCCTCTCGGACTACAAC 56597 Query 24171 ATTCAAAAAGAATCTAC 24187 || || || || || || Sbjct 56596 ATCCAGAAGGAGTCCAC 56580 Score = 89.7 bits (98), Expect = 4e-13 Identities = 138/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 ||||| | ||||| || || || || || || | ||||| ||||||||||| || Sbjct 56548 ATGCAGATCTTTGTCAAGACTTTGACCGGCAAGACCATTACGCTCGAAGTCGAGTCCTCG 56489 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 ||||| ||||| | ||||| |||||| ||||| || ||||| ||||| || || Sbjct 56488 GACACTATCGACAACGTCAAGGCCAAGATTCAGGACAAGGAGGGCATTCCTCCTGACCAG 56429 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 ||| | || || | | |||||||| || ||||||| | | | | | ||| || ||| Sbjct 56428 CAGCGTCTTATCTTTGCAGGCAAGCAGCTTGAAGATGGCCGTACCCTTTCCGACTACAAC 56369 Query 24171 ATTCAAAAAGAATCTAC 24187 ||||| || || || || Sbjct 56368 ATTCAGAAGGAGTCCAC 56352 >seq52 Length=95535 Score = 89.7 bits (98), Expect = 4e-13 Identities = 144/207 (70%), Gaps = 0/207 (0%) Strand=Plus/Minus Query 23987 CAAAATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGC 24046 ||| ||||| | ||||| ||||| | || || || | || ||| |||| |||||| | Sbjct 17853 CAAGATGCAGATCTTTGTTAAAACCCTCACGGGTAAGACCATCACCCTCGAGGTCGAGTC 17794 Query 24047 CAACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGA 24106 ||||||||||| | ||||| ||||| ||||| ||||| || || || || Sbjct 17793 TTCGGACACCATCGACAACGTCAAGGCCAAGATCCAGGACAAGGAAGGTATTCCCCCTGA 17734 Query 24107 TCAACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTA 24166 ||| ||| | || || | || ||| ||||| |||||||||| | | | || || || Sbjct 17733 TCAGCAGCGTCTCATCTTCGCCGGTAAGCAGCTCGAAGATGGTCGTACCCTCTCGGACTA 17674 Query 24167 TAACATTCAAAAAGAATCTACAATTCA 24193 ||||| || || ||||| || |||| Sbjct 17673 CAACATCCAGAAGGAATCCACCCTTCA 17647 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429864418477455