Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilago_20xerochloae_20[genbank_20GCA_5F001736075.1_202016-09-20] 13,661 sequences; 24,230,715 total letters Query= NC_008168.1 Length=104710 Score E Sequences producing significant alignments: (Bits) Value seq629 140 2e-28 seq23 96.9 2e-15 >seq629 Length=1468 Score = 140 bits (154), Expect = 2e-28 Identities = 88/95 (93%), Gaps = 5/95 (5%) Strand=Plus/Minus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 |||||||||||||||||||||||||||||||||||||||||||| || |||||||| Sbjct 1440 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGT 1381 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 |||||| |||||||||||||||||||||||||||| Sbjct 1380 TAATCCATTCATGCGCGTCACTAATTAGATGACGA 1346 >seq23 Length=140287 Score = 96.9 bits (106), Expect = 2e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 38090 ACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGA 38149 ||| || | || |||||| || | || | ||||||||||| ||||||||||||||||| Sbjct 2460 ACCGCCACGCAGACGCAAAACTAGGTGCAAGGTGCTCTCCTTCTGAATATTGTAATCAGA 2401 Query 38150 CAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGG 38209 || | ||| | || || || ||||| || ||||| || | || || || |||| || Sbjct 2400 CAGAGTTCGTCCATCCTCCAACTGTTTACCAGCAAAGATCAAACGCTGCTGGTCGGGAGG 2341 Query 38210 GACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAAC 38269 | ||||| |||||| ||| || || ||||| | | || || || || || Sbjct 2340 AATACCTTCCTTGTCCTGAATCTTGGCTTTGACATTGTCAATGGTGTCCGAGCTCTCCAC 2281 Query 38270 TTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 || | ||| || ||||| || || | || || || || |||||||| Sbjct 2280 CTCGAGTGTGATCGTTTTGCCAGTAAGCGTCTTGACAAAGATCTGCAT 2233 Score = 86.0 bits (94), Expect = 4e-12 Identities = 157/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 38089 TACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAG 38148 ||||||| | | ||| | ||||| || || || ||||||||| || ||||| || | Sbjct 1777 TACCACCACGGAGACGGAGGACCAAGTGCAGGGTCGACTCCTTTTGGATGTTGTAGTCCG 1718 Query 38149 ACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGG 38208 | | | ||| | || || | || ||||||||||| || || || || ||||||| | Sbjct 1717 AAAGAGTTCGTCCATCCTCAAGCTGCTTTCCGGCAAAAATGAGACGCTGCTGATCGGGAG 1658 Query 38209 GGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAA 38268 ||| || || |||||| ||| || ||| || || | | || || | |||| Sbjct 1657 GGATCCCCTCCTTGTCCTGAATCTTGGCCTTGACGTTGTCAATGGTGTCGGAAGACTCAA 1598 Query 38269 CTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCATG 38318 | || | || || || ||||| |||| || || ||||| ||||||||| Sbjct 1597 CCTCGAGGGTGATGGTCTTACCGGTCAGAGTCTTTACGAAGATCTGCATG 1548 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 334891433489291