Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilago_20xerochloae_20[genbank_20GCA_5F001736075.1_202016-09-20] 13,661 sequences; 24,230,715 total letters Query= NC_008291.1 Length=198050 Score E Sequences producing significant alignments: (Bits) Value seq36 170 2e-37 seq67 125 9e-24 >seq36 Length=116313 Score = 170 bits (188), Expect = 2e-37 Identities = 622/961 (65%), Gaps = 16/961 (2%) Strand=Plus/Plus Query 63020 AGTCCAGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTC 63079 || || || || || | || ||||| | |||||| || |||| | || || | ||| Sbjct 38702 AGACCGGGGCACTCGTTGGGGCACATGAGCGACCAATCACCGTTCTGCTCAACCCTCTTC 38761 Query 63080 ATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGTTCCTCGTTT 63139 || |||||||| |||| ||| ||||| || || || | || | | ||| || || Sbjct 38762 ATGAAGAGATCGGGAACCCAGAGAGCGTAGAAGAGTTCACGGGCACGAACTTCTTCCTTA 38821 Query 63140 CCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTAT 63199 || ||||| | ||||||||| | | | ||| || ||||| || || | ||| Sbjct 38822 CCGTGGTTCTTGCGCAAGTCGAGGAACTCAAAGACATCCGAGTGCCAAGGCTCAATGTAG 38881 Query 63200 ATGGCCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTA 63259 ||||| | | || || || ||||| || ||||| || | ||| | |||||||| || Sbjct 38882 ATGGCAAAGGCACCGGGACGCTTGTTACCACCCTGGTCGACGTAACGGGCGGTGTTGTTG 38941 Query 63260 TAAACTCTCAACATTGGAATAATACCATTGGATGTACCATTGGTCCCTGAGATATAGCTT 63319 | || | | ||| |||| ||||| ||| ||| ||||| || | || ||| Sbjct 38942 AAGACACGAAGCATGGGAACGATACCGTTGCTGACACCGTTGGTGCCGGCAATGTAGGAG 39001 Query 63320 CCACTGGCACGAATATTACTAATTGAT-AGACCTATTCCCCCTGCCATTTTAGAGATTAA 63378 ||| | | ||||| | | | || | | ||| || || || || | || ||||| | Sbjct 39002 CCAGTACCTCGAATGC-AGTGAATGTTCAAACCAATGCCACCGGCGGTCTTGGAGATCAT 39060 Query 63379 TGCGCATCGTTTTAACGTATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAG 63438 || || || | || || || ||||| || || |||||| ||||| ||| || Sbjct 39061 GGCACAGGTCTTGAGGGTGTCGTAAATGCCGTCGATCGAGTCATCCTTCATGGTAACAAG 39120 Query 63439 AAAACAG--CTAGACATTTGG-TGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGC 63495 |||||| | ||| | ||| || || || || || || || | ||| || || || Sbjct 39121 GAAACAGGACGAGAGCTGTGGGTGGGGAGTA---CCAGCGTTGAAGAGGGTTGGCGAGGC 39177 Query 63496 GTGAGTAAACCATTTTTCAGAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATATCCCA 63555 ||||||||| | |||| || | || ||||||||||| || || || || ||| Sbjct 39178 GTGAGTAAAGTACTTTTGCGACATGAGGTTGTACGTCTCGATGGCGCTCTCGATGTCCTG 39237 Query 63556 TTGATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTT 63615 ||||| || || || |||||||| | ||||||||| || | ||| | | |||| Sbjct 39238 GCCGTGAATACCAACAGCAACACGCATGAGCATGTGCTGGGGACGCTCAGCAACCTTGCC 39297 Query 63616 GTTTATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAA 63675 ||| || | ||||||||| || | ||| || || || || ||||||| || Sbjct 39298 GTTGATGCGGAGCAAGTAGGAACGCTCGAGAGTCTTGAAGCCGAAGAAGTTGTAGTGGAA 39357 Query 63676 GTCTCGTTCGTAAATAATAACCGAGTTGAGTTTATCCTTATATTTGTTAACTACATCCAT 63735 ||| || ||||| || ||| |||||| || | ||||| | | | || || | Sbjct 39358 GTCGCGCTCGTAGATGATAGCCGAGTCAAGCTGGTCCTTGTGCTCCATGACGACCTTGTA 39417 Query 63736 GGTAATACTTGAAATAATAGGAAAATGTTTCCCATTTTTAGGATTGACATAGTTGAATAA 63795 ||| || || || ||||| || | || || || || |||||||| | | | || Sbjct 39418 GGTGGTATCGGAGATCATAGGGCTGTGCCTGCCGTTCTTGGGGTTGACATACTCGTACAA 39477 Query 63796 ATCCTCCATCACTTCACTAAATAGttttt--ttGTTTCTTTGTGTAGATTTGAT-ACGGC 63852 |||| | |||| || | |||| || | || || ||||| | | ||| | | ||| Sbjct 39478 GTCCTGGACGACTTGGCTGA--AGTTCTTGCTAGTCTCCTTGTGCA-AGTTGCTGATGGC 39534 Query 63853 TATTCTAGCGGCTAGAATGGCATAATCCGGATGTTGTGTAGTACAAGT-GGCTGCTATTT 63911 || | || || || | |||||| || || ||| ||| || | || ||| || | | Sbjct 39535 AATACGCGCAGCAAGGACGGCATAGTCTGGGTGTGTTGTTGT-CTTGTAGGCGGCAGTCT 39593 Query 63912 CGGCTGCCAGAGTGTCCAATTCTACCGTTGTTACACCATTATATATTCCTTGGATAACCT 63971 |||| || || |||| | ||||| || || ||||| | || || || | ||| || | Sbjct 39594 CGGCAGCAAGGTTGTCAAGCTCTACGGTGGTGACACCCTCGTAGATACCGTCGATGACTT 39653 Query 63972 T 63972 | Sbjct 39654 T 39654 >seq67 Length=86059 Score = 125 bits (138), Expect = 9e-24 Identities = 365/558 (65%), Gaps = 8/558 (1%) Strand=Plus/Plus Query 32661 CATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGT 32720 || ||||| ||| ||| ||||| ||||| | || | |||||||| || |||||| Sbjct 4636 CAGGCGAAGTCGGTGTGAAGACCTTCGTCGCGTGAGATGAGCTCGTTGGAGAAGGTGAGT 4695 Query 32721 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAA 32780 |||||||| || |||||||| || ||||| || ||||| || || || || || ||||| Sbjct 4696 CCGGGCATAAGACCACGCTTCTTGAGCCAGAAGATGGAGGCGAAGGAGCCGGAGAAGAAG 4755 Query 32781 ATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGGC---GCTGTCATGT 32837 || || || ||||| |||||||||| || | || | | ||| || ||| Sbjct 4756 ATACCCTCAACTGCGGCAAAGGCAACGAGACGTTCGGCGAAGGTGGCTTTGCGGTCGCTG 4815 Query 32838 ATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGCATTA 32897 ||||| ||||||| |||||||||| || || || || ||||| | || | | Sbjct 4816 ATCCAACGAAGAGCCCAGTCGGCCTTCTGCTTGACGACGGGGATGGTCTCGACGGCGTCA 4875 Query 32898 AAGAGATAGtttttttCATTACTATCTTTAACATATGTATCAATCAAAAGACTATACATT 32957 ||||| | | | | | | || || || || || || | || || | Sbjct 4876 AAGAGGAATTCTCGCTGCTCAGGCTCACGAATGTAGGTGTCGATGAGGAGCGAGTAAGTC 4935 Query 32958 TCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAGCATCTAGCCTCGGTAATC 33017 || || |||||||| || || || || || || |||||||||| |||||||| | | Sbjct 4936 TCGGAGTGAATGTTCTCCATCATGATCTGGAAACCATAGAAGCATCGAGCCTCGGCAGCC 4995 Query 33018 TGTACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCA 33077 || ||||| | || || || || | | || || || || || || || || || Sbjct 4996 TGAACTTCGGAACTGAAACGCTCGACGAGGTTCTCGTTGACGATACCATCGGAAGCAGCG 5055 Query 33078 AAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTT-AGTTTATT---CCA 33133 || || || | || || ||||| | |||| || ||| || || || ||| Sbjct 5056 AAGAAGGCGAGGACGTGGGAGATAAAGTGACGCTCGT-TGTCGTTGAGCTTGTTGTCCCA 5114 Query 33134 ATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTT 33193 |||| || || || || | || | || || | |||||||| || ||||||||||| Sbjct 5115 GTCATGGAGGTCCTTGGAAAGGTCGATCTCCTCGGCGGTCCAAAAGGAAGCCTCTGCCTT 5174 Query 33194 TTTATACATATTCCAGAT 33211 || ||||| | ||| || Sbjct 5175 CTTGTACATTTGCCAAAT 5192 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 633523799415600