Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilago_20xerochloae_20[genbank_20GCA_5F001736075.1_202016-09-20] 13,661 sequences; 24,230,715 total letters Query= NC_008293.1 Length=135454 Score E Sequences producing significant alignments: (Bits) Value seq53 127 2e-24 seq23 107 2e-18 >seq53 Length=94643 Score = 127 bits (140), Expect = 2e-24 Identities = 150/201 (75%), Gaps = 8/201 (4%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || ||||| |||||||||||||| || |||| || ||||||| ||||| || Sbjct 56548 ATGCAGATCTTTGTCAAGACTTTGACCGGCAAGACCATTACGCTCGAAGTCGAGTCCTCG 56489 Query 25059 GACACTATCGA----GTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGA 25114 ||||||||||| |||| | || || | ||| ||||| || || ||||| ||||| Sbjct 56488 GACACTATCGACAACGTCA---AGGCCAAGATTCA-GGACAAGGAGGGCATTCCTCCTGA 56433 Query 25115 CCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTA 25174 ||| ||||| |||| ||||| ||||| || | ||||||| || || | ||| || Sbjct 56432 CCAGCAGCGTCTTATCTTTGCAGGCAAGCAGCTTGAAGATGGCCGTACCCTTTCCGACTA 56373 Query 25175 CAATATTCAAAAAGAATCCAC 25195 ||| ||||| || || ||||| Sbjct 56372 CAACATTCAGAAGGAGTCCAC 56352 >seq23 Length=140287 Score = 107 bits (118), Expect = 2e-18 Identities = 142/194 (73%), Gaps = 6/194 (3%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || ||||| ||||| | || || ||| | |||||| |||| |||||| || Sbjct 2233 ATGCAGATCTTTGTCAAGACGCTTACTGGCAAAACGATCACACTCGAGGTGGAGAGCTCG 2292 Query 25059 GACACTATCGAGTCACTG---AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGAC 25115 ||||| || || || || |||| || | ||| ||||| ||||| ||||| || ||| Sbjct 2293 GACACCATTGA--CAATGTCAAAGCCAAGATTCAG-GACAAGGAAGGTATTCCTCCCGAC 2349 Query 25116 CAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTAC 25175 || ||||| | || ||||| || ||||| || || |||| || ||| || |||||| Sbjct 2350 CAGCAGCGTTTGATCTTTGCTGGTAAACAGTTGGAGGATGGACGAACTCTGTCTGATTAC 2409 Query 25176 AATATTCAAAAAGA 25189 |||||||| || || Sbjct 2410 AATATTCAGAAGGA 2423 Score = 104 bits (114), Expect = 2e-17 Identities = 154/216 (71%), Gaps = 8/216 (4%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || || ||||||||| |||||||||| ||||||| |||| || ||||| || Sbjct 1549 ATGCAGATCTTCGTAAAGACTCTGACCGGTAAGACCATCACCCTCGAGGTTGAGTCTTCC 1608 Query 25059 GACACTATCGA----GTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGA 25114 ||||| || || |||| | || || | ||| ||||| || ||||| || || || Sbjct 1609 GACACCATTGACAACGTCA---AGGCCAAGATTCAG-GACAAGGAGGGGATCCCTCCCGA 1664 Query 25115 CCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTA 25174 || ||||| | ||||||||||| || || | || |||| || ||| | || || Sbjct 1665 TCAGCAGCGTCTCATTTTTGCCGGAAAGCAGCTTGAGGATGGACGAACTCTTTCGGACTA 1724 Query 25175 CAATATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 ||| || ||||| || || || || || || || || Sbjct 1725 CAACATCCAAAAGGAGTCGACCCTGCACTTGGTCCT 1760 Score = 100 bits (110), Expect = 2e-16 Identities = 115/155 (74%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || || || ||||| |||||||| || |||| || ||||||| ||||| || Sbjct 1777 ATGCAGATTTTCGTCAAGACCTTGACCGGCAAGACCATTACGCTCGAAGTCGAGTCCTCG 1836 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 ||||||||||| | ||| || ||| ||||| ||||| ||||| |||||||| Sbjct 1837 GACACTATCGACAACGTTAAGGCCAAGATCCAGGACAAGGAAGGCATTCCCCCTGACCAG 1896 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGA 25153 ||||| |||| ||||| || || || | ||||| Sbjct 1897 CAGCGTCTTATCTTTGCTGGAAAGCAGCTCGAAGA 1931 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433255853731715