Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilago_20xerochloae_20[genbank_20GCA_5F001736075.1_202016-09-20] 13,661 sequences; 24,230,715 total letters Query= NC_008518.1 Length=174059 Score E Sequences producing significant alignments: (Bits) Value seq67 192 7e-44 >seq67 Length=86059 Score = 192 bits (212), Expect = 7e-44 Identities = 385/570 (68%), Gaps = 13/570 (2%) Strand=Plus/Plus Query 93091 GCACGCAAAGTCGGTATGTAAACCTTCGTCTCGTGATATCAACTCATTGCTGAATGTTAA 93150 ||| || |||||||| || | ||||||||| ||||| || | ||| ||| ||| || | Sbjct 4635 GCAGGCGAAGTCGGTGTGAAGACCTTCGTCGCGTGAGATGAGCTCGTTGGAGAAGGTGAG 4694 Query 93151 ACCTGGTAACAGTCCTCGTTTCTTGAGCCAAAATATTGAAGCAAAACTACCAGaaaaaaa 93210 || || | || || || ||||||||||| || || || || || || || || || Sbjct 4695 TCCGGGCATAAGACCACGCTTCTTGAGCCAGAAGATGGAGGCGAAGGAGCCGGAGAAGAA 4754 Query 93211 TATACCTTCCACGGCTGCAAATGCCACAATACGTTCGGCAAA-----ATTTGCGGAATTA 93265 ||||| || || || ||||| || || | ||||||||| || ||||||| Sbjct 4755 GATACCCTCAACTGCGGCAAAGGCAACGAGACGTTCGGCGAAGGTGGCTTTGCGG----- 4809 Query 93266 CTGCTGATCCATTTTAAAGCCCAATCGGCTTTTTTCTTAATACAAGGTAGTGTTTCGATA 93325 ||||||||| | |||||| ||||| || | ||| | || | || |||| Sbjct 4810 TCGCTGATCCAACGAAGAGCCCAGTCGGCCTTCTGCTTGACGACGGGGATGGTCTCGACG 4869 Query 93326 GCGTTAAATAGGTAATCTCGCTCGTCCGAATCTCGTATGTATGTATCGATTAACAGAGAA 93385 |||| ||| ||| | ||||||| || | || || ||||| || ||||| | || || Sbjct 4870 GCGTCAAAGAGGAATTCTCGCTGCTCAGGCTCACGAATGTAGGTGTCGATGAGGAGCGAG 4929 Query 93386 TACATTTCAGAATGGACATTCTCCATTGCAATTTGGAATCCGTAGAAACATCTAGCTTCC 93445 || | || || || | |||||||| || ||||| || ||||| |||| ||| || Sbjct 4930 TAAGTCTCGGAGTGAATGTTCTCCATCATGATCTGGAAACCATAGAAGCATCGAGCCTCG 4989 Query 93446 GTGATCTGCACTTCTTGAGAAAATCTCTCTACGAGATTTTCATTGACTATACCATCGGAT 93505 | ||| ||||| | || | ||| ||||| || || ||||| ||||||||||| Sbjct 4990 GCAGCCTGAACTTCGGAACTGAAACGCTCGACGAGGTTCTCGTTGACGATACCATCGGAA 5049 Query 93506 GCTGCaaaaaaaGCCAATATATGCTTTATAAAATGTTTCTCATCATCTTTAAGC---TTA 93562 || || || || || | | || ||||| || ||| | || || ||| || Sbjct 5050 GCAGCGAAGAAGGCGAGGACGTGGGAGATAAAGTGACGCTCGTTGTCGTTGAGCTTGTTG 5109 Query 93563 TCCCAATCGGATAGATCTTTTGAAAGATCGACTTCTTCGACAGTCCAAAACGATGCTTCT 93622 ||||| || || || || ||||| |||| || ||| | |||||||| || || ||| Sbjct 5110 TCCCAGTCATGGAGGTCCTTGGAAAGGTCGATCTCCTCGGCGGTCCAAAAGGAAGCCTCT 5169 Query 93623 GCTTTTTTGTACATATCCCATATGTCTTGA 93652 || || |||||||| | ||| || | |||| Sbjct 5170 GCCTTCTTGTACATTTGCCAAATCTGTTGA 5199 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 556765709057640