Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilago_20xerochloae_20[genbank_20GCA_5F001736075.1_202016-09-20] 13,661 sequences; 24,230,715 total letters Query= NC_008586.1 Length=131204 Score E Sequences producing significant alignments: (Bits) Value seq23 132 4e-26 seq53 129 5e-25 seq52 120 3e-22 seq100 105 6e-18 >seq23 Length=140287 Score = 132 bits (146), Expect = 4e-26 Identities = 166/228 (73%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 |||||||| ||||| || || | || || || || ||||| | ||||| || | | Sbjct 2005 ATGCAAATCTTTGTCAAGACGCTCACAGGAAAGACCATCACTTTGGAAGTCGAGTCTTCG 2064 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || || | ||| || |||| || || || || |||||||||||||| |||||||| Sbjct 2065 GACACGATCGACAATGTCAAGGCCAAGATCCAGGATAAGGAGGGTATTCCTCCCGATCAG 2124 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 ||||| || || ||||| || || ||||| || || |||||| | || ||||||||| Sbjct 2125 CAACGACTCATCTTTGCTGGTAAGCAGTTGGAAGACGGTCGCACCCTTTCGGATTACAAC 2184 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGT 22446 ||||| || ||| |||| | || | || ||||||||||| || ||| Sbjct 2185 ATTCAGAAGGAAAGCACCTTGCACCTTGTCTTGCGATTGCGAGGTGGT 2232 Score = 116 bits (128), Expect = 3e-21 Identities = 151/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || || || || ||| | |||||||| || |||| || || || || | || Sbjct 1549 ATGCAGATCTTCGTAAAGACTCTGACCGGTAAGACCATCACCCTCGAGGTTGAGTCTTCC 1608 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || ||| | ||| | |||| || ||||| ||||||||||| || || |||||||| Sbjct 1609 GACACCATTGACAACGTCAAGGCCAAGATTCAGGACAAGGAGGGGATCCCTCCCGATCAG 1668 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || ||||| || |||||||| || ||| | |||||| || || | || || |||||| Sbjct 1669 CAGCGTCTCATTTTTGCCGGAAAGCAGCTTGAGGATGGACGAACTCTTTCGGACTACAAC 1728 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGT 22427 || ||||| || || ||| | || || || Sbjct 1729 ATCCAAAAGGAGTCGACCCTGCACTTGGT 1757 >seq53 Length=94643 Score = 129 bits (142), Expect = 5e-25 Identities = 151/204 (74%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || ||||| || ||||| ||||| || || | || || ||||| || || | Sbjct 56548 ATGCAGATCTTTGTCAAGACTTTGACCGGCAAGACCATTACGCTCGAAGTCGAGTCCTCG 56489 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || || | ||| | |||| || ||||| ||||||||||| ||||| || || || Sbjct 56488 GACACTATCGACAACGTCAAGGCCAAGATTCAGGACAAGGAGGGCATTCCTCCTGACCAG 56429 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || |||||||| ||||| ||||| ||| | || ||| ||| ||| | ||||| |||||| Sbjct 56428 CAGCGTCTTATCTTTGCAGGCAAGCAGCTTGAAGATGGCCGTACCCTTTCCGACTACAAC 56369 Query 22399 ATTCAAAAAGAATCCACCATACAT 22422 ||||| || || |||||| | ||| Sbjct 56368 ATTCAGAAGGAGTCCACCTTGCAT 56345 Score = 118 bits (130), Expect = 9e-22 Identities = 146/200 (73%), Gaps = 0/200 (0%) Strand=Plus/Minus Query 22217 AGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCA 22276 ||||||| || ||||| || || | ||||| || || |||| || || || || || Sbjct 56778 AGATGCAGATCTTTGTCAAGACCCTCACCGGCAAGACCATCACCCTCGAGGTTGAGTCCT 56719 Query 22277 CCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATC 22336 | || ||| | ||| || |||| || ||||| |||||||| || || |||||||||| Sbjct 56718 CGGACACCATCGACAATGTCAAGGCCAAGATTCAGGACAAGGAAGGCATCCCACCCGATC 56659 Query 22337 AACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACA 22396 | || || || || || || || || ||| | || ||| ||||||| |||| || |||| Sbjct 56658 AGCAGCGACTCATCTTCGCTGGTAAGCAGCTCGAAGATGGCCGCACCCTCTCGGACTACA 56599 Query 22397 ACATTCAAAAAGAATCCACC 22416 |||| || || || |||||| Sbjct 56598 ACATCCAGAAGGAGTCCACC 56579 >seq52 Length=95535 Score = 120 bits (132), Expect = 3e-22 Identities = 147/201 (73%), Gaps = 0/201 (0%) Strand=Plus/Minus Query 22216 AAGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACC 22275 |||||||| || ||||||||||| | || ||||| || |||| || || || || | Sbjct 17852 AAGATGCAGATCTTTGTTAAAACCCTCACGGGTAAGACCATCACCCTCGAGGTCGAGTCT 17793 Query 22276 ACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGAT 22335 | || ||| | ||| | |||| || || || |||||||| |||||||| || ||| Sbjct 17792 TCGGACACCATCGACAACGTCAAGGCCAAGATCCAGGACAAGGAAGGTATTCCCCCTGAT 17733 Query 22336 CAACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTAC 22395 || || ||||| || || ||||| || ||| | || ||| || ||| |||| || ||| Sbjct 17732 CAGCAGCGTCTCATCTTCGCCGGTAAGCAGCTCGAAGATGGTCGTACCCTCTCGGACTAC 17673 Query 22396 AACATTCAAAAAGAATCCACC 22416 ||||| || || ||||||||| Sbjct 17672 AACATCCAGAAGGAATCCACC 17652 >seq100 Length=67640 Score = 105 bits (116), Expect = 6e-18 Identities = 126/171 (74%), Gaps = 0/171 (0%) Strand=Plus/Plus Query 22246 GGTAAAACGGTCACTCTTGAAGTGGAAACCACCGATACCGTGGACGATATCAAACAAAAA 22305 ||||| || |||| ||||| ||||| | |||| ||| | ||| | |||| || Sbjct 61006 GGTAAGACCATCACCCTTGAGGTGGAGTCTTCCGACACCATCGACAACGTCAAGGCCAAG 61065 Query 22306 ATTCAAGACAAGGAGGGTATTCCACCCGATCAACAACGTCTTATATTTGCCGGCAAACAG 22365 || || |||||||||||||| || ||||| || || ||||| || || ||||| || ||| Sbjct 61066 ATCCAGGACAAGGAGGGTATCCCCCCCGACCAGCAGCGTCTCATCTTCGCCGGTAAGCAG 61125 Query 22366 TTAGAGGATCACCGCACCGTCTCCGATTACAACATTCAAAAAGAATCCACC 22416 | ||||| ||||||| |||| || |||||||| || || || || ||| Sbjct 61126 CTCGAGGACGGCCGCACCCTCTCGGACTACAACATCCAGAAGGAGTCTACC 61176 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419658118042465