Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilago_20xerochloae_20[genbank_20GCA_5F001736075.1_202016-09-20] 13,661 sequences; 24,230,715 total letters Query= NC_008603.1 Length=321240 Score E Sequences producing significant alignments: (Bits) Value seq36 127 4e-24 seq5 105 1e-17 seq113 102 2e-16 >seq36 Length=116313 Score = 127 bits (140), Expect = 4e-24 Identities = 477/734 (65%), Gaps = 33/734 (4%) Strand=Plus/Plus Query 293032 GTTTTAAGACCCTTCTTCCATGCGTAGAACAGCATAGATGTCATA-GACTTCAGTGTGGG 293090 || || |||||||||||||| ||||||| |||| || |||| ||| || | || Sbjct 37574 GTCTTGAGACCCTTCTTCCAACCGTAGAAGTGCATCGAAGTCAACTGACCGAAG-GAAGG 37632 Query 293091 AGTGGCCAGGAAAAGGTTCATGCTCTGCGTCTGATCGACAAAGGCACCACGATCAGCAGC 293150 || | || | | ||| | | || | ||| | || ||||| |||||||| || Sbjct 37633 AGCCGACAAGTGGATGTTGAGGGATTGAGACTGGCAAATGAAAGCACCTCGATCAGCGGC 37692 Query 293151 GAGGTCAATCACTGTCTTCATAGAGATCTCCCACGATGTCTTGTACACTGCCTTGACA-- 293208 | ||| || | | |||| ||||||||||| |||||||| | ||||| | Sbjct 37693 CATGTCGATGATAGCCTTCTGGGAGATCTCCCAAACAGTCTTGTAGAGCTTCTTGATACG 37752 Query 293209 -TCAGGATGAATGCCAATAACCTTCTGGATAGACCCTCCGTTGGCAATAATCTGGTTCTT 293267 |||| |||| ||| ||| |||||||| || || |||| || ||||| ||||||| Sbjct 37753 GTCAG---GAATACCAGGAACGTTCTGGATGGAACCACCGTGAGCGATAATACGGTTCTT 37809 Query 293268 CATTGTCTCGGACCAAGTCCCACGAGCAATGAGCTCGCGGACAAGGTAAGAGTTGACAAC 293327 ||| || ||| ||| || | | | ||| ||||||| | ||| |||||| || Sbjct 37810 CATGGTGTCGTTCCACAATCCTTGCTCGACGAGTTCGCGGAGCAACCAAGGGTTGACGAC 37869 Query 293328 GGGGAACTCACCAGCGAGAGTGCGACGGCTGTAAATGTTCGAAGTGATGGGTTCGGCTGC 293387 |||| |||||||| || ||||| ||| ||||| || ||| ||| || | || Sbjct 37870 CTGGAATTCACCAGCAAGGACACGACGAGAGTAGATGTTGGAGGTGTAGGGCTC-GAAGC 37928 Query 293388 CTCAACAGACCCGCAA-ATCTGAGCAGTAGATGCGGTAGGCATAAGAGCAGTCGTCAGAG 293446 | || | ||| |||||| || |||||||||||||| |||| | || | Sbjct 37929 ATTCGTTGAAACCCAAGATCTGACTTGTGGATGCGGTAGGCATGGGAGCGAGCAAGAGCG 37988 Query 293447 AGTTCCTCACACCCTTCTTGACACGCGAT-------TCGAGACCCGCCCAGTCCAGAGCA 293499 |||| | | ||| | |||| ||||| | ||| ||||||||| | | Sbjct 37989 AGTTGCGAAGACCGTGCTTG----GCGATCTTGGCCTTGAGCGAAGCCCAGTCCCAAAGA 38044 Query 293500 GTCTG-AGGTGTAACACCCCAGAGATGATACTGCATGATACCCTTGCTGGCAGGAGACCC 293558 || | ||| ||||||||||| | | ||||| | ||||| | |||||| || || Sbjct 38045 -TCGGAAGGGGTAACACCCCACATGTCGTACTGGAGTTCACCCTGGGAGGCAGGGGAACC 38103 Query 293559 CTCAAAGGTGGGATGGGGGCCATGCTCATCAGAGAGCTCGCAAGATGCCTCAACAGCAGC 293618 | |||| | || ||||||||| | | | |||||| ||| ||| | ||| || Sbjct 38104 GGCGTAGGTCTCGTAGGTGCCATGCTCCTGGGCCAACTCGCACGATCGCTCGAGAGCGGC 38163 Query 293619 AAAGTAAATGTGCTCGAAGATCT-CACGGTTGAGCTTGCGAGCCTGCTCAGAGTCAAACG 293677 ||| ||| ||||||||||| ||| | ||| ||||||| || ||||| | Sbjct 38164 GTGGTAGATGGTCTCGAAGATCTGGACGTTCAAGC-GACGAGCCTCGGGCGACTCAAA-G 38221 Query 293678 GCAT----CTTCAGCTGGAAGAACACATCCTGCAGACCCTGTACACCTACACCAACGGGG 293733 || | | | | | | ||| |||| |||||||| ||||| | ||||| |||| Sbjct 38222 GCGTAACCCATGATC---ATGAAGGCATCGGCGAGACCCTGGACACCGATACCAATGGGG 38278 Query 293734 CGACGACGCTTGTT 293747 || ||||| |||| Sbjct 38279 CGGTGACGCATGTT 38292 >seq5 Length=263138 Score = 105 bits (116), Expect = 1e-17 Identities = 134/181 (74%), Gaps = 4/181 (2%) Strand=Plus/Plus Query 280179 GGACCCAATGGTGCGGGTAAGTCTACCCTAATCAAAGTCCTGACTGGCGAGACCCAGGCC 280238 || ||||| ||| |||||||||| ||||| |||| | | || || ||| || || Sbjct 76668 GGCCCCAACGGTTCGGGTAAGTCGACCCTTGTCAAGCTTGTTGTCGGTGACACCGAGCCC 76727 Query 280239 A-CTGAGGGGTCCGTT-TGGAAGCATCCCAACATGCGGATGGCTTACGTCGCTCAGCACG 280296 | || |||| ||| |||||||| |||||| || || | ||||||||| ||||||| Sbjct 76728 AACTC--GGGTGAGTTCTGGAAGCACCCCAACTTGGTCATCGGTTACGTCGCCCAGCACG 76785 Query 280297 CTTTCCACCACATCGAGAACCACCTGGACATGACTCCTAACCAATACATTCAGTGGCGCT 280356 | |||||||||||||| | ||||| |||| ||||||| | | ||||| | ||||| | Sbjct 76786 CCTTCCACCACATCGACCAGCACCTAGACAAGACTCCTCTCGACTACATGCTCTGGCGTT 76845 Query 280357 A 280357 | Sbjct 76846 A 76846 Score = 102 bits (112), Expect = 2e-16 Identities = 127/174 (73%), Gaps = 0/174 (0%) Strand=Plus/Plus Query 279345 GGTGAGGATCTGTGTGACTGTGATTTCTCGCTCGCATATGGTGGGAAGATTCTGCTAAAC 279404 |||||||| || || |||| | ||||| ||||| || |||| |||||||| || ||| Sbjct 75837 GGTGAGGACCTCTGCAACTGCCAGTTCTCACTCGCCTACGGTGCCAAGATTCTTCTCAAC 75896 Query 279405 TCTACCCGCCTCAACATCAAGCGTGGCAACCGGTATGGTCTCATCGGTCCCAATGGAGCG 279464 | || |||| ||||||||||| |||| || |||||| ||||| || || | Sbjct 75897 ACCGCCACCCTCCGTCTCAAGCGTGGCCACCGATACGGTCTCTGCGGTCGTAACGGTTCC 75956 Query 279465 GGTAAGAGCACTCTAATGCGCGCCATTGCAAACGGTCAGCTGGAAGGATTTCCT 279518 |||||| ||| || ||||| ||||| | ||||| ||| | ||||| || ||| Sbjct 75957 GGTAAGTCCACCCTCATGCGTGCCATCACCAACGGCCAGGTCGAAGGCTTCCCT 76010 Score = 93.3 bits (102), Expect = 9e-14 Identities = 125/174 (72%), Gaps = 0/174 (0%) Strand=Plus/Plus Query 279704 TCTGTCGGGTGGTTGGAAGATGAAGCTGGCCCTCACTCGCGCCATTCTACTGCGTGCCGA 279763 ||| || |||||||||||||||||| | ||||| |||| |||||||| | ||||| Sbjct 76190 TCTCTCCGGTGGTTGGAAGATGAAGGTCGCCCTTGCTCGTGCCATTCTCTTCAAGGCCGA 76249 Query 279764 TGTCCTACTGCTTGATGAGCCAACCAACCACATGGACACCACCAACGTAGCCTGGCTAGT 279823 | || || || |||||||| ||||||||| ||||| | |||||| ||| | Sbjct 76250 CATTCTCCTCCTCGATGAGCCCACCAACCACTTGGACGTCGTCAACGTCAAGTGGATTAC 76309 Query 279824 GTCCTACCTAACCAGTCTGAAGAATGTTTCTTCCCTCATTGTCTCTCACGACTC 279877 |||||| || || |||| || | || || |||| ||||| |||||||| Sbjct 76310 CGACTACCTCGTCAACCTCAAGACTGCTACTGCCATCATCGTCTCGCACGACTC 76363 >seq113 Length=59678 Score = 102 bits (112), Expect = 2e-16 Identities = 320/492 (65%), Gaps = 8/492 (2%) Strand=Plus/Minus Query 218518 GACTTCATCGACAAGGAGCTCATTCTTTTCTCGCGGTATGATGTGGAGCGTTCTATTCCC 218577 || |||||| |||||||||||||||| ||||| | || |||||| ||||| Sbjct 56428 GATTTCATCAACAAGGAGCTCATTCTCTTCTCAATGGCCGACAACATGCGTTCAATTCCG 56369 Query 218578 AGCGTGGTGGATGGCCTCAAGCCATCGCAGCGTAAGATCCTCTTTGCCGCATTCAAGCGG 218637 | || ||||| ||||||||| || || ||| || |||| | | ||||| || Sbjct 56368 TCGGCCGTCGATGGTCTCAAGCCAGGTCAACGAAAGGTCATCTTCGGTACCTTCAACCGC 56309 Query 218638 AACCTGGTTCAAG---AAATTAAGGTCGCTCAGTTTTCTGGTTATGTATCCGAAATTTCT 218694 || || | | | | || |||||||||||| | ||| | || |||| | || Sbjct 56308 AA---GGGTGACGGTGAGATCAAGGTCGCTCAGCTCGTCGGTCACGTCTCCGGTACCACT 56252 Query 218695 GGCTACCATCACGGTGAGCAGAGTCTGCAGGGTG-CCATTGTAGGCATGGCACAGGACTA 218753 | ||||| |||||||| ||| || | || |||| || || | || ||| ||| Sbjct 56251 GCTTACCACCACGGTGAACAGTCGCTT-ACCATGACCATCGTGGGTCTCGCGCAGAACTT 56193 Query 218754 TGTGGGCAGTAACAACATGAACTTGCTGCTCCCCAACGGTCAGTTTGGTTCTCGTCTATT 218813 || || || |||||| | |||||||| || | ||||| || ||| ||||| | | Sbjct 56192 CGTCGGTAGCAACAACGTCAACTTGCTCGAGCCAAGGGGTCAATTCGGTACTCGTTTGCT 56133 Query 218814 GGGTGGAAAGGATAGTGCTTCTGCCAGGTATATCTTTACAAAGTTGTCGCCCGTGACGCG 218873 ||||| || ||| ||| || ||||||||||| || || | || | | || || Sbjct 56132 CGGTGGTAAAGATGCTGCCTCGGCCAGGTATATTTTCACCGCGCTGCCCAAGATCACTCG 56073 Query 218874 CCAGGTGTTCAATCAGGCCGATGATGTGCTCCTTAAGTATCTTGAGGACGATGGTTCTTC 218933 | | ||| ||| |||||| | | ||| | || || || || |||||| Sbjct 56072 CGCTCTCTTCCCCCAGAACGATGACGCTTTGCTTGAATACCTGGATGATGATGGTCAGAG 56013 Query 218934 GATTGAGCCCGAGTGGTATGTGCCTGCTATTCCGTTTTTGCTCGTAAATGGTGCCAATGG 218993 || ||||| ||||||| |||||| | ||| |||| | || ||||| | || Sbjct 56012 CATCGAGCCTCAGTGGTACATGCCTGTGGTGCCGCAGGTGCTGCTCAACGGTGCTGAAGG 55953 Query 218994 TATCGGGACAGG 219005 |||||| || || Sbjct 55952 TATCGGTACCGG 55941 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1027656896118901