Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilago_20xerochloae_20[genbank_20GCA_5F001736075.1_202016-09-20] 13,661 sequences; 24,230,715 total letters Query= NC_008724.1 Length=288047 Score E Sequences producing significant alignments: (Bits) Value seq53 194 3e-44 seq52 179 7e-40 seq23 161 2e-34 seq100 131 3e-25 seq5 122 2e-22 seq113 107 4e-18 seq36 84.2 4e-11 >seq53 Length=94643 Score = 194 bits (214), Expect = 3e-44 Identities = 179/227 (79%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || || ||||| | || | ||| || |||||||| || |||||||| || || ||| Sbjct 56550 CCACCACGGAGGCGGAGAACGAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCCGAG 56609 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | |||||||| | |||||| || ||||| ||||||| || || |||||||| Sbjct 56610 AGGGTGCGGCCATCTTCGAGCTGCTTACCAGCGAAGATGAGTCGCTGCTGATCGGGTGGG 56669 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 |||||||||||||| |||||||| |||||||| ||||||||||| | || || || Sbjct 56670 ATGCCTTCCTTGTCCTGAATCTTGGCCTTGACATTGTCGATGGTGTCCGAGGACTCAACC 56729 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || | ||||||||| || || |||||||||||||| || |||||||| Sbjct 56730 TCGAGGGTGATGGTCTTGCCGGTGAGGGTCTTGACAAAGATCTGCAT 56776 >seq52 Length=95535 Score = 179 bits (198), Expect = 7e-40 Identities = 176/227 (78%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || |||||||| | || | ||| || ||||| || || |||||||| || || ||| Sbjct 17623 CCACCACGAAGGCGGAGGACGAGGTGAAGGGTGGATTCCTTCTGGATGTTGTAGTCCGAG 17682 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | |||||||| | |||||| |||||||| ||||| | || || || || ||| Sbjct 17683 AGGGTACGACCATCTTCGAGCTGCTTACCGGCGAAGATGAGACGCTGCTGATCAGGGGGA 17742 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 || ||||||||||| || ||||| ||||||||| ||||||||||| | || || || Sbjct 17743 ATACCTTCCTTGTCCTGGATCTTGGCCTTGACGTTGTCGATGGTGTCCGAAGACTCGACC 17802 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || | ||||||||| || ||||||||||| || || || |||||||| Sbjct 17803 TCGAGGGTGATGGTCTTACCCGTGAGGGTTTTAACAAAGATCTGCAT 17849 >seq23 Length=140287 Score = 161 bits (178), Expect = 2e-34 Identities = 172/227 (76%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || || || || | |||||||| || || ||||| ||||||||||| || || || Sbjct 1775 CCACCACGGAGACGGAGGACCAAGTGCAGGGTCGACTCCTTTTGGATGTTGTAGTCCGAA 1716 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | ||||| || | |||||| ||||| || ||||| | || || ||||| || Sbjct 1715 AGAGTTCGTCCATCCTCAAGCTGCTTTCCGGCAAAAATGAGACGCTGCTGATCGGGAGGG 1656 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 || || |||||||| |||||||| ||||||||| || |||||||| | || || || Sbjct 1655 ATCCCCTCCTTGTCCTGAATCTTGGCCTTGACGTTGTCAATGGTGTCGGAAGACTCAACC 1596 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || | ||||||||| || || || || ||||| ||||| |||||||| Sbjct 1595 TCGAGGGTGATGGTCTTACCGGTCAGAGTCTTTACGAAGATCTGCAT 1549 Score = 138 bits (152), Expect = 2e-27 Identities = 145/191 (76%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 68271 TCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAAT 68330 || || |||||||| || || ||||| || | || ||||| | |||||| || || || Sbjct 1967 TCCTTCTGGATGTTGTAGTCCGAGAGGGTTCGGCCGTCTTCGAGCTGCTTTCCAGCAAAG 1908 Query 68331 ATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCC 68390 || || | || ||||| || ||||||||||||||||| || ||||| ||||| ||| Sbjct 1907 ATAAGACGCTGCTGGTCAGGGGGAATGCCTTCCTTGTCCTGGATCTTGGCCTTAACGTTG 1848 Query 68391 TCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACG 68450 ||||| ||||| | || || ||||| | || ||||| || || || | |||||||||| Sbjct 1847 TCGATAGTGTCCGAGGACTCGACTTCGAGCGTAATGGTCTTGCCGGTCAAGGTCTTGACG 1788 Query 68451 AATATCTGCAT 68461 || |||||||| Sbjct 1787 AAAATCTGCAT 1777 Score = 122 bits (134), Expect = 2e-22 Identities = 163/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || || || ||||| || | ||| | ||| ||| || || || || ||||| || Sbjct 2459 CCGCCACGCAGACGCAAAACTAGGTGCAAGGTGCTCTCCTTCTGAATATTGTAATCAGAC 2400 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | ||||| || ||||| || || || || || | | || |||||||| ||| Sbjct 2399 AGAGTTCGTCCATCCTCCAACTGTTTACCAGCAAAGATCAAACGCTGCTGGTCGGGAGGA 2340 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 || ||||||||||| |||||||| || ||||| || |||||||| | || || Sbjct 2339 ATACCTTCCTTGTCCTGAATCTTGGCTTTGACATTGTCAATGGTGTCCGAGCTCTCCACC 2280 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || | ||||| ||||| || || || |||||||| || |||||||| Sbjct 2279 TCGAGTGTGATCGTTTTGCCAGTAAGCGTCTTGACAAAGATCTGCAT 2233 >seq100 Length=67640 Score = 131 bits (144), Expect = 3e-25 Identities = 149/200 (75%), Gaps = 0/200 (0%) Strand=Plus/Minus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || || || || | || | ||| || || ||||| || |||||||| || || ||| Sbjct 61205 CCACCACGGAGACGGAGGACGAGGTGGAGGGTAGACTCCTTCTGGATGTTGTAGTCCGAG 61146 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | || || || | |||||| |||||||| ||||| | || |||||||| || Sbjct 61145 AGGGTGCGGCCGTCCTCGAGCTGCTTACCGGCGAAGATGAGACGCTGCTGGTCGGGGGGG 61086 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 || || |||||||| || ||||| ||||||||| ||||||||||| | || || || Sbjct 61085 ATACCCTCCTTGTCCTGGATCTTGGCCTTGACGTTGTCGATGGTGTCGGAAGACTCCACC 61026 Query 68415 TCCAAGGTGATGGTTTTTCC 68434 || | ||||||||| || || Sbjct 61025 TCAAGGGTGATGGTCTTACC 61006 >seq5 Length=263138 Score = 122 bits (134), Expect = 2e-22 Identities = 319/481 (66%), Gaps = 22/481 (5%) Strand=Plus/Minus Query 225524 ACGTTGCTGACGTCCATGTGGTTTGTAGGTTCGTCCAGAAGCAGGATGTCAGCATCAATG 225583 |||||| |||||||| |||||| || || || || || || || ||||| || | | | Sbjct 76297 ACGTTGACGACGTCCAAGTGGTTGGTGGGCTCATCGAGGAGGAGAATGTCGGCCTTGAAG 76238 Query 225584 AGGATGGCGCGCGTGAGAGACAGCTTCATTTTCCAGCCCCCGGACAGGGAGCCGATTGAA 225643 || ||||| || | || | | |||||| ||||| || ||||| || | |||| | Sbjct 76237 AGAATGGCACGAGCAAGGGCGACCTTCATCTTCCAACCACCGGAGAGACCGGCGATGGGC 76178 Query 225644 ACAGAGTGCTTA---GCTTCGTCAAAGCCGTACTCCAGGAGCGTCTGGATAATGCGCTCG 225700 |||| || | || ||||| |||||| ||| | || |||| || || ||| Sbjct 76177 ---GAGTTCTGACGGGCGTCGTCGAAGCCGACCTCGTGAAGGGTCTTGACG--GC-CTC- 76125 Query 225701 GGAGAGCTG-----CGAGCGGCAACGTTGGGGTCGGACGAGAGGTAATCATATACGGTCA 225755 | ||| |||| | ||| | |||| ||| | | ||| ||||||| Sbjct 76124 --ATCCCTGGTCATCGAGAG---ACGCTTA--TCGGCGCAGATGAAGTCAAGGACGGTCA 76072 Query 225756 TGTCCGAGACAGACGCGTCAATGTCGTGGTCCACGTACACCGTCCGGAGCTGAGAAGCAT 225815 | || |||| |||||| |||||| || |||||| || |||| || | Sbjct 76071 TCTCACCCTCAGAACCGTCAAGGTCGTGCTCGACGTACCAGGTTCGGACCTCTTCGGGCG 76012 Query 225816 CGGGGAAGCCCTCCAGCTGGCCATTTGCAATCGCACGGAGCAGGGTACTCTTGCCCGCGC 225875 |||||||| || | |||||| || | || ||||| | ||||| ||| || | | Sbjct 76011 AAGGGAAGCCTTCGACCTGGCCGTTGGTGATGGCACGCATGAGGGTGGACTTACCGGAAC 75952 Query 225876 CGTTGGGACCGATGAGGCCGTAATGATTCCCGCGCTTGATGTTGAGGCGCGTGGAGTTCA 225935 |||| ||||| ||| ||||| | | || ||||||| |||| | || ||| | Sbjct 75951 CGTTACGACCGCAGAGACCGTATCGGTGGCCACGCTTGAGACGGAGGGTGGCGGTGTTGA 75892 Query 225936 GGAGGATCTTGCCACCATAGGCAAGGGAGAACTCGCAATCGCACAGGTCCTCACCCTCCT 225995 | || |||||| |||| ||||| || ||||||| ||| | ||| |||||||||||||||| Sbjct 75891 GAAGAATCTTGGCACCGTAGGCGAGTGAGAACTGGCAGTTGCAGAGGTCCTCACCCTCCT 75832 Query 225996 C 225996 | Sbjct 75831 C 75831 >seq113 Length=59678 Score = 107 bits (118), Expect = 4e-18 Identities = 699/1106 (63%), Gaps = 27/1106 (2%) Strand=Plus/Plus Query 176166 CCGTCATCCTCGAGGTAGTTCAGCAGACGCTCGTCGGCCTTGTGGAAAATATCCCGGGTG 176225 || ||||| || ||||| | |||| | || ||| || | |||| | | | || ||| Sbjct 56019 CCATCATCATCCAGGTATTCAAGCAAAGCGTCATCGTTCTGGGGGAAGAGAGCGCGAGTG 56078 Query 176226 TTGGGGGACAGTTGTGTGAAGATATACCTAGCAGACGCACTGTCCTTGCCTCCGTGAAGG 176285 | || ||| ||||| |||||||| || || ||| || || || ||| | | Sbjct 56079 ATCTTGGGCAGCGCGGTGAAAATATACCTGGCCGAGGCAGCATCTTTACCACCGAGCAAA 56138 Query 176286 CGGGAACCGAATTGTCCGCGAGGAAGAAGCAAATTGATGTTATTCGAACCCACGTAGTCT 176345 || | ||||||||| || | || ||||| |||| ||| || ||| ||| ||| Sbjct 56139 CGAGTACCGAATTGACCCCTTGGCTCGAGCAAGTTGACGTTGTTGCTACCGACGAAGTTC 56198 Query 176346 TGGGCCATTCCGACTATGGCGCCCTGG--AGAGACGCCTCGCCGTGGTGATAGCCGGCGT 176403 || || | || || |||| | ||| || ||| || |||||||| || | | | Sbjct 56199 TGCGCGAGACCCACGATGGT--CATGGTAAGCGACTGTTCACCGTGGTGGTAAGCAGTGG 56256 Query 176404 TCTCACTTGTGTATCCGGCAAACTGCGCGACTTTGATTTCTTGTACGAGGTTGCGCTTCA 176463 | | || ||| | | ||| ||||| ||||| || | ||||| || | Sbjct 56257 TACCGGAGACGTGACCGACGAGCTGAGCGACCTTGATCTCACCGTCACCCTTGCGGTTGA 56316 Query 176464 ACGCCGAGAACAGAATCTTCCGCTGCGAGGGCTTCAGACCATCGACGACCGACGGAATGG 176523 | | ||| | | ||| || || ||||| |||||||||||| |||||||||| | Sbjct 56317 AGGTACCGAAGATGACCTTTCGTTGACCTGGCTTGAGACCATCGACGGCCGACGGAATTG 56376 Query 176524 AACGCTCTACATCGTATCTTGAAAAAAGGATAAGGTCTTTGTTTATGAAATCCTCCACTG 176583 ||||| ||| |||| || || || || || ||||| |||||||| | | Sbjct 56377 AACGCATGTTGTCGGCCATTGAGAAGAGAATGAGCTCCTTGTTGATGAAATCGGCGTAAG 56436 Query 176584 GAATCTTCGTGAGCTTCTGGTCGAGCTGGTTGCCAGGCTCGAAATCAAGGAGCCACGTCT 176643 |||| | || || || ||||| | | | ||||| ||| | |||||||| || Sbjct 56437 GAATTCTATCGATGTTGTGATCGAGGTAGGTTCCAGGTCGGAACTGTCGGAGCCACTCCT 56496 Query 176644 TCCGTTCGTCCGCCCGAGACTTGTTGAAAGACTTGTCAATGCTTTCGGCCGCGTTGTCAG 176703 | || || |||||| ||||||||||| |||||| ||| || | || Sbjct 56497 TTCGGTCATCCGCCTTCTTCTTGTTGAAAGCAAGATCAATGAGCTCG--CGA-TCACCAT 56553 Query 176704 ACCACGTA--AGCGTCTT-CACCAGGGCCTT---CAGGTTGTTGAAGTACCGCTTGGCGT 176757 | ||| | || || || | ||| || ||||||| |||||| | Sbjct 56554 CCTTCGTGGTATCGAAAGGCAACATGTGCTTATCCATAGCACGGAAGTACTTCTTGGCAT 56613 Query 176758 CATTGGCGTCGGAGGTACCCAGACCCTTGTAATACTTAGTCTTCCAGGTAGAGACATCGG 176817 | | | ||| |||||||| ||||||||||| || || | |||| ||| | Sbjct 56614 CTTGAGAGTCCGAGGTACCGAGACCCTTGTAGTATTTGATGCGCCAGCCCTTTCCATTGT 56673 Query 176818 ATGTCGCGGCCTTCCAC-TCTTCGAAATCCGGGATGCTGTAGAACTCCACCATCTTGGTG 176876 || | |||||||| || | | | || |||||| || |||| | | ||| | Sbjct 56674 TGTTCTCCTCCTTCCACGTCAT-GTACTCGGGGATGGTGAAGAAGGAGAGCTCCTTCTTA 56732 Query 176877 CCCTTCTTGGCGACCACAATTGGAGTCACGAAGCGCTTGA---GGAACCCGGGGATCTCG 176933 ||||| || || || ||||| | ||| || || |||| ||||| |||| | Sbjct 56733 CCCTTGGTGCACTTGACGATGGGAGTGATGAA---CTCGACAAGGAAACCGGGAATCTTG 56789 Query 176934 AGCAGCGACGGGAACT-GTGCATGGAAAAAGTTCAGCACTAGACCAGCAATATGTGAGCC 176992 |||||||| ||| | ||| | || ||||| | | ||||| |||||||| || Sbjct 56790 AGCAGCGATGGGTAGAAGTGG-TCGAGGAAGTTGATGATGAGACCCTTGATATGTGAACC 56848 Query 176993 GTCAACGTCCTGGTCTGCCATAATAATCACAGACCCGTACCG-AAGAGAGGACGCGTCCT 177051 || ||||| || | ||| || || | | ||||| || ||| | | |||| Sbjct 56849 ATCGTGATCCTGATCGGTCATGATCATGATACTGCCGTATCGCAAGCTACTAA-CGTCAA 56907 Query 177052 TGTAGTTCACACCATTGCGGAGACCGAGAATTTGTTTGATGGCAGTAATCTCGGCGTTGT 177111 || | | || | | ||||||||||||| ||||||||| | || || ||||| | Sbjct 56908 GATATTGCTTGCCGTGTTGAAGACCGAGAATTTCTTTGATGGCTTTGATTTCTGCGTTCT 56967 Query 177112 TAGTAATACTAGACAC-AGACGCATCACGGACATTCAGTAGCTTACCACGGAGGGGGAAA 177170 | | || || | | || || ||||| || || || |||||||||||||| || || Sbjct 56968 TCATGAT-CTGGTCGTGAGTGGCCTCACGAACGTTGAGAAGCTTACCACGGAGCGGAAAG 57026 Query 177171 ATTCCGTAGCGATCCCGACCCACGACAGCAAGGCCAGCTGTGGCAAGCGTGGCGGCAGAG 177230 | |||||| || |||||||| || ||||||| || || || | ||| ||| Sbjct 57027 ACACCGTAGTTGTCACGACCCACTTCAACAAGGCCGGCAACAGCGAGAGCCTTGGCGGAG 57086 Query 177231 TCACCCTCTGTCAAAATGAGCGTGCA 177256 ||||| || || | |||||| || || Sbjct 57087 TCACCTTCGGTGAGAATGAGTGTACA 57112 >seq36 Length=116313 Score = 84.2 bits (92), Expect = 4e-11 Identities = 291/444 (66%), Gaps = 14/444 (3%) Strand=Plus/Plus Query 30798 GCGTTTGCAGCAGGCTTGCTTCTGCAGTAATACATAAGCGTCTTGAGACCCTTCTTCCAT 30857 ||||| | || |||||| | | | ||| || || |||||||||||||||||||| Sbjct 37535 GCGTTGGATGCTGGCTTGGTACGGAGGTAGTAGGTACCGGTCTTGAGACCCTTCTTCCAA 37594 Query 30858 GCATAGAACAGCATGGAAGACAT-TGACTTCATAGAGGGCGCTGCAACGAAGAGGTTCAT 30916 | ||||| |||| |||| || |||| | || || || | | | || ||| | Sbjct 37595 CCGTAGAAGTGCATCGAAGTCAACTGACCGAAG-GAAGGAGCCGACAAGTGGATGTTGAG 37653 Query 30917 GCTCTGTGTCTGGTCAACAAACGGACCGCGGTCTGCTGCAAGGTCAATGACGGTCTTCAT 30976 | || | |||| || || | ||| || || || || | ||| |||| | |||| Sbjct 37654 GGATTGAGACTGGCAAATGAAAGCACCTCGATCAGCGGCCATGTCGATGATAGCCTTCTG 37713 Query 30977 AGACAGCTCCCATGCGGTCTTGTAGATTGCCTTGA---GCTCAGGGTGGATGCCAATGAC 31033 || | |||||| | |||||||||| ||||| | ||||| || ||| || Sbjct 37714 GGAGATCTCCCAAACAGTCTTGTAGAGCTTCTTGATACGGTCAGGA---ATACCAG-GA- 37768 Query 31034 ACGTT--GGATGGACCCCCCGTTGGCAATAATCTGGTTCTTCATGGCCTCGGACCACGTG 31091 ||||| ||||||| || |||| || ||||| |||||||||||| ||| |||| Sbjct 37769 ACGTTCTGGATGGAACCACCGTGAGCGATAATACGGTTCTTCATGGTGTCGTTCCACAAT 37828 Query 31092 CCACGAGCGATGAGGTCGCGCACGAGGTAGTTGTTGACCACAGGGAACTCTCCAGCAAGG 31151 || | ||| ||| ||||| | | | |||||| || |||| || ||||||||| Sbjct 37829 CCTTGCTCGACGAGTTCGCGGAGCAACCAAGGGTTGACGACCTGGAATTCACCAGCAAGG 37888 Query 31152 GTCCGGCGGCTGTACAGATTAGAAGTGATCGGCTCCATAGCCT-CTACGGACCCGCAGAT 31210 || || ||| | || || ||| ||||| | ||| | | | | || |||| Sbjct 37889 ACACGACGAGAGTAGATGTTGGAGGTGTAGGGCTCGA-AGCATTCGTTGAAACCCAAGAT 37947 Query 31211 TTGCGCGGTGGATGCGGTGGGCAT 31234 || ||||||||||| ||||| Sbjct 37948 CTGACTTGTGGATGCGGTAGGCAT 37971 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 921465021454920