Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilago_20xerochloae_20[genbank_20GCA_5F001736075.1_202016-09-20] 13,661 sequences; 24,230,715 total letters Query= NC_009011.2 Length=131331 Score E Sequences producing significant alignments: (Bits) Value seq53 118 9e-22 seq23 118 9e-22 seq52 104 2e-17 >seq53 Length=94643 Score = 118 bits (130), Expect = 9e-22 Identities = 163/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 114155 ACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCGCT 114214 ||||||||| || | | || | ||| | || || || || ||||||||||| ||| Sbjct 56321 ACCGCCACGAAGACGGAGGACAAGATGCAAGGTGGACTCCTTCTGAATGTTGTAGTCGGA 56380 Query 114215 CATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGG 114274 | ||||| ||||||||| || || || || |||| |||||||| ||||| ||||| Sbjct 56381 AAGGGTACGGCCATCTTCAAGCTGCTTGCCTGCAAAGATAAGACGCTGCTGGTCAGGAGG 56440 Query 114275 AATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCGAC 114334 |||||| || ||||| |||||| || | | || | ||||| | ||| ||||| Sbjct 56441 AATGCCCTCCTTGTCCTGAATCTTGGCCTTGACGTTGTCGATAGTGTCCGAGGACTCGAC 56500 Query 114335 GTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || | || | || |||||||||| ||| || ||||| |||||||| Sbjct 56501 TTCGAGCGTAATGGTCTTGCCGGTCAAAGTCTTGACAAAGATCTGCAT 56548 >seq23 Length=140287 Score = 118 bits (130), Expect = 9e-22 Identities = 163/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 114155 ACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCGCT 114214 ||||||||| || | |||||||| || | || || || ||||| |||||||| Sbjct 2460 ACCGCCACGCAGACGCAAAACTAGGTGCAAGGTGCTCTCCTTCTGAATATTGTAATCAGA 2401 Query 114215 CATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGG 114274 || ||| || ||| || | ||||||||||| |||| | |||||| ||||| ||||| Sbjct 2400 CAGAGTTCGTCCATCCTCCAACTGTTTACCAGCAAAGATCAAACGCTGCTGGTCGGGAGG 2341 Query 114275 AATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCGAC 114334 ||| ||||| ||||| |||||| ||| | | |||| |||||| | | || || Sbjct 2340 AATACCTTCCTTGTCCTGAATCTTGGCTTTGACATTGTCAATGGTGTCCGAGCTCTCCAC 2281 Query 114335 GTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || | || | ||||||||| || || || || ||||| |||||||| Sbjct 2280 CTCGAGTGTGATCGTTTTGCCAGTAAGCGTCTTGACAAAGATCTGCAT 2233 Score = 109 bits (120), Expect = 5e-19 Identities = 164/233 (70%), Gaps = 0/233 (0%) Strand=Plus/Minus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 ||||| ||||| || | | || || || | || || || ||||| |||||||| || Sbjct 1778 ATACCACCACGGAGACGGAGGACCAAGTGCAGGGTCGACTCCTTTTGGATGTTGTAGTCC 1719 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 | ||| || ||| ||||| || || || || | ||||||||||| || || ||| Sbjct 1718 GAAAGAGTTCGTCCATCCTCAAGCTGCTTTCCGGCAAAAATGAGACGCTGCTGATCGGGA 1659 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332 || || || || ||||| |||||| || | | |||| |||||||| || || Sbjct 1658 GGGATCCCCTCCTTGTCCTGAATCTTGGCCTTGACGTTGTCAATGGTGTCGGAAGACTCA 1599 Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATGGC 114385 || || | ||| | || || ||||||||||| ||||| || ||||||||||| Sbjct 1598 ACCTCGAGGGTGATGGTCTTACCGGTCAGAGTCTTTACGAAGATCTGCATGGC 1546 Score = 86.0 bits (94), Expect = 5e-12 Identities = 112/155 (72%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 114228 TCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTG 114287 ||||| || || || ||||| |||| |||||||| ||||| || ||||||||||| ||| Sbjct 1931 TCTTCGAGCTGCTTTCCAGCAAAGATAAGACGCTGCTGGTCAGGGGGAATGCCTTCCTTG 1872 Query 114288 TCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACC 114347 || ||||| || | | || | ||||| | ||| ||||| || | || | Sbjct 1871 TCCTGGATCTTGGCCTTAACGTTGTCGATAGTGTCCGAGGACTCGACTTCGAGCGTAATG 1812 Query 114348 GTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || |||||||||| || || || ||||||||||| Sbjct 1811 GTCTTGCCGGTCAAGGTCTTGACGAAAATCTGCAT 1777 >seq52 Length=95535 Score = 104 bits (114), Expect = 2e-17 Identities = 141/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 114186 GTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCA 114245 || ||||| || || |||||||| || | |||||| |||||| || || ||||| Sbjct 17653 GTGGATTCCTTCTGGATGTTGTAGTCCGAGAGGGTACGACCATCTTCGAGCTGCTTACCG 17712 Query 114246 GCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTT 114305 ||| ||||||||||||| || || || ||||| ||||| ||||| ||||| || Sbjct 17713 GCGAAGATGAGACGCTGCTGATCAGGGGGAATACCTTCCTTGTCCTGGATCTTGGCCTTG 17772 Query 114306 AGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTT 114365 | | || | |||||| | || ||||| || | ||| | || || || || || ||| Sbjct 17773 ACGTTGTCGATGGTGTCCGAAGACTCGACCTCGAGGGTGATGGTCTTACCCGTGAGGGTT 17832 Query 114366 TTTACAAAAATCTGCAT 114382 || ||||| |||||||| Sbjct 17833 TTAACAAAGATCTGCAT 17849 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 420064450379532