Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilago_20xerochloae_20[genbank_20GCA_5F001736075.1_202016-09-20] 13,661 sequences; 24,230,715 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq36 307 2e-78 seq67 255 1e-62 >seq36 Length=116313 Score = 307 bits (340), Expect = 2e-78 Identities = 869/1328 (65%), Gaps = 40/1328 (3%) Strand=Plus/Plus Query 244298 CCCCACATGTCAAACTGCAGCAGCCCCTTGCTGACGGGGCTGCCCTCGTAGGTCGGGTAG 244357 ||||||||||| |||| || |||| | | | ||| || |||||||| |||| Sbjct 38060 CCCCACATGTCGTACTGGAGTTCACCCTGGGAGGCAGGGGAACCGGCGTAGGTCTCGTAG 38119 Query 244358 GGACCGTCGCGCTGGGCCAGCTTACAGCTCTCG-TCGAGGGCGGCGTAGTAGATGGTCTC 244416 | || | |||||||| || || | ||| ||||| ||||||| |||||||||||| Sbjct 38120 GTGCCATGCTCCTGGGCCAACTCGCA-CGATCGCTCGAGAGCGGCGTGGTAGATGGTCTC 38178 Query 244417 GAAGATCATCTTGTTCATGTCGCGGGCCTTGCCGCAGGTGAAGGGGATGCCCATCATCAT 244476 ||||||| ||||| | || |||| | | |||| | ||||| ||||| Sbjct 38179 GAAGATCTGGACGTTCAAGCGACGAGCCTCGGGCGACTCAAAGGCGTAACCCATGATCAT 38238 Query 244477 GAAGACGTCGGCCAGTCCCTGCACGCCGATGCCGATGGGTCTGTGTCGCTTGTTGGAGCG 244536 |||| | ||||| || ||||| || ||||| || ||||| | ||| ||| |||| || || Sbjct 38239 GAAGGCATCGGCGAGACCCTGGACACCGATACCAATGGGGCGGTGACGCATGTTAGAACG 38298 Query 244537 CATGGCTTCGGGCACGGGGTAAAAGTTGCCGTCGATCACCTTGTTGAGGTTGCGGGTGAT 244596 || || || ||||| ||||| ||||| | ||||| | ||| | ||| Sbjct 38299 ACGAGCCTCCTCAACAGGGTAGTAGTTGATATCGATGATTTTGTTCAAGTTCTTGCAGAT 38358 Query 244597 CATGCGGACGACGTCGGCCAGCAGCTGAAAGTCGTACTCGTAGGGATCCTCGGCGATGGT 244656 | | || ||| || ||| |||||||| | | || | | | ||||| Sbjct 38359 AGCCTTGGCAACCTCGTGCAAACGCTTGAAGTCGTAGACCTTGGTAACGGGGTCGATGAA 38418 Query 244657 GATCCTCACAAACTCGTTGAGGGCGACGCTGGCCAGGTTGCAGACGGCCACCTCCTCCGA 244716 | | | || |||| | ||| |||||||| || || ||||| || | Sbjct 38419 GGT------------GGGAAGAGCGATGGAGGCAAGGTTGCAAACAGCAACCTCATCGGG 38466 Query 244717 GTTGGTGTACTGGACAATCTCGGTGCAGAGGTTACTGCACTTGATGGTGCCCAGGTGCTG 244776 |||||| || ||||| ||||| | ||| ||||||||| || || |||| || Sbjct 38467 AGCACTGTACTCGATGATCTCAGTGCACAAGTTGGAGCACTTGATAGTACCGAGGTTCTT 38526 Query 244777 GTGATTGGACTTGGCGTTGCAGGCGTCCTTGTAGAGCATGAAGGGCCCCCCGGTCTCGAG 244836 || ||||||||| |||| |||||||||||||| |||||||| ||||||||| Sbjct 38527 CTGGTTGGACTTGCGGTTGGCAGCGTCCTTGTAGAGGATGAAGGGGTTACCGGTCTCGGT 38586 Query 244837 CTGGGCGACGAGGACGCTGTTCCAGAGGTCCCTAGCCTTGACCGT--CCTGCGAGCCTTG 244894 ||| | |||||| | || |||||| | | ||||||||| || || |||| Sbjct 38587 CTGCGACTCGAGGATGGCGTACCAGAGCTTCTGAGCCTTGACGGTGCGCTTTGAGC--GA 38644 Query 244895 CCCTCTGCCTCGTAGCGGGTGTACAGGGCCTCGAACTCGGGGCCCCAGACCTCGTCTAGG 244954 || || |||||||| || ||| || ||||||||| || || ||| | || Sbjct 38645 CCTTCGGCCTCGTAACGCTCGTAGAGACGCTCGAACTCTTCACCGTAGCAGTCGGCAAGA 38704 Query 244955 CCGGGGCACGACGCCGGGCACATGAGACTCCACTCGCCGCCGTCCTTGACCCTCTGCATG 245014 ||||||||| ||||||||||| ||| || ||| | || ||||||| |||| Sbjct 38705 CCGGGGCACTCGTTGGGGCACATGAGCGACCAATCACCGTTCTGCTCAACCCTCTTCATG 38764 Query 245015 AAGAGGTCGGGGATCCAGAGGGCCTGGAAGAGGTCCCTGGTCCTCTGCTCGTCCGAGCCA 245074 ||||| ||||| | |||||| || | |||||| || | || | || ||| || Sbjct 38765 AAGAGATCGGGAACCCAGAGAGCGTAGAAGAGTTCACGGGCACGAACTTCTTCCTTACCG 38824 Query 245075 GTGTTCTTCCTCAGCTCCAAAAAGTCAAAGACGTCGACGTGCCAGGGCTCCATGTAGACA 245134 |||||| | || || | || |||||||| || |||||| ||||| ||||||| Sbjct 38825 TGGTTCTTGCGCAAGTCGAGGAACTCAAAGACATCCGAGTGCCAAGGCTCAATGTAGATG 38884 Query 245135 GCGAGGGCGCCGGGCCGCTTGTTGCCTCCCTGGTCCACCATCCTCTCGAGCG----CGTT 245190 || | ||| ||||| |||||||| || |||||||| | | | || ||| ||| Sbjct 38885 GCAAAGGCACCGGGACGCTTGTTACCACCCTGGTCGA----CGTAACGGGCGGTGTTGTT 38940 Query 245191 GAAGATGCGCAGGGTAGGCACTATGCCGTTAGAGTGGCCGTTGGTGCCCTTGATGTAGGC 245250 ||||| || || | || || || ||||| | ||||||||||| ||||||| Sbjct 38941 GAAGACACGAAGCATGGGAACGATACCGTTGCTGACACCGTTGGTGCCGGCAATGTAGGA 39000 Query 245251 GCCCTTGCCCCTGAGGTTGCTGATGGACATGCCTAGTCCGCCGGCGTGCTTGGAGATGAG 245310 ||| | || | | | | ||| || || | || |||||| ||||||||| | Sbjct 39001 GCCAGTACCTCGAATGCAGTGAATGTTCAAACCAATGCCACCGGCGGTCTTGGAGATCAT 39060 Query 245311 GGCGCAGCTCTTGATGGTGTCTGCTATGCCCTCCATGCTGTCCGACTTCATGTTGAGCAG 245370 ||| ||| |||||| |||||| ||||| || || ||| ||||||| | | || Sbjct 39061 GGCACAGGTCTTGAGGGTGTCGTAAATGCCGTCGATCGAGTCATCCTTCATGGTAACAAG 39120 Query 245371 AAAGCAGGAGGACAGCTGGGGCTTGGGGCTGCACGAGTTGAACAGAGTGGGGCTGGCGTG 245430 || ||||| || ||||| || | ||| | | | |||||| || || || |||||| Sbjct 39121 GAAACAGGACGAGAGCTGTGGGTGGGGAGTACCAGCGTTGAAGAGGGTTGGCGAGGCGTG 39180 Query 245431 GGTAAAGTAGCGGCTCGAGAGGAACCCGTACGTCTGGAGCAGAGC-GTCGATGTTGTCGC 245489 |||||||| ||| | || |||||||| || | || ||||||| | || Sbjct 39181 AGTAAAGTACTTTTGCGACATGAGGTTGTACGTCTCGA-TGGCGCTCTCGATGTCCTGGC 39239 Query 245490 CGTGGATCTGCAGGGCGCACCTCATGAGGGTGTGCTGGGGCGTCTCGATGGGTCCCTCGG 245549 |||| || | || | |||||| |||||||||| ||| | ||| | Sbjct 39240 CGTGAATACCAACAGCAACACGCATGAGCATGTGCTGGGGACGCTC---AGCAACCTTG- 39295 Query 245550 GTCCCTT------GAGCATGTAGGAGCGCTCGAGCGTCTTGAACCCAAAGTACGAGTAGC 245603 || || ||||| |||||| |||||||| |||||||| || ||| | |||| Sbjct 39296 --CCGTTGATGCGGAGCAAGTAGGAACGCTCGAGAGTCTTGAAGCCGAAGAAGTTGTAGT 39353 Query 245604 CAAAGTCG 245611 |||||| Sbjct 39354 GGAAGTCG 39361 >seq67 Length=86059 Score = 255 bits (282), Expect = 1e-62 Identities = 478/687 (70%), Gaps = 24/687 (3%) Strand=Plus/Minus Query 42309 ATGTACAAGAAGGCGCAGTTCTCCAACTGGACCGCCGAGGAGATTGACCTGGCCAAGGAC 42368 |||||||||||||| || ||| ||||||||||||||||| ||||| |||||||| Sbjct 5183 ATGTACAAGAAGGCAGAGGCTTCCTTTTGGACCGCCGAGGAGATCGACCTTTCCAAGGAC 5124 Query 42369 ACGGCCGGCTGGGAGT-CACTGTCT--GAGAACGAAAAGT---TTTTCCTCAAAAACATA 42422 | |||||| || || || ||||| || ||| ||| | | | Sbjct 5123 CTCCATGACTGGGACAACAAGCTCAACGACAACGAGC-GTCACTTTATCTCCCA--CGTC 5067 Query 42423 CTGGCCTTCTTCGCCGCCTCTGACGGCATAGTCAATGAGAACCTGGCCACCAGGTTCATG 42482 || ||||||||||| || || || || || ||||| |||||||| | | | |||| Sbjct 5066 CTCGCCTTCTTCGCTGCTTCCGATGGTATCGTCAACGAGAACCTCGTCGAGCGTTTCAGT 5007 Query 42483 AAAGAGGTGCAGTACTTTGAGGCGCGCTGCTTCTACGGCTTCCAGATAGCCATAGAGAAC 42542 || || ||| ||||| || |||||||| || |||||||| || |||||| Sbjct 5006 TCCGAAGTTCAGGCTGCCGAGGCTCGATGCTTCTATGGTTTCCAGATCATGATGGAGAAC 4947 Query 42543 GTGCACTCTGAGGTGTACGCCAAACTGCTCAACACGTACATCCTGGATCCCGTCGAGCGT 42602 | ||||| ||| ||| | || || |||| ||||| | || || | |||| Sbjct 4946 ATTCACTCCGAGACTTACTCGCTCCTCATCGACACCTACATTCGTGAGCCTGAGCAGCGA 4887 Query 42603 AACGGGCTGTTCAAGGCCATGGAGACGATGCCCTGCATCAAGAAGAAGGCGGACTGGGCG 42662 | || || | ||| | ||||| || ||| | ||||| ||||||| |||||||| Sbjct 4886 GAATTCCTCTTTGACGCCGTCGAGACCATCCCCGTCGTCAAGCAGAAGGCCGACTGGGCT 4827 Query 42663 CTCAACTGGATCGAGAGTCC-CGACGCAACGTTCGGCGAGAGGCTGGTAGCCTTTACCGC 42721 || |||||| || | || | | || || |||| ||| | || || |||||| |||| Sbjct 4826 CTTCGTTGGATC-AGCGACCGCAAAGCCACCTTCGCCGAACGTCTCGTTGCCTTTGCCGC 4768 Query 42722 CGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTCTGGCTCAAGCAGAAGGT 42781 || ||||| ||||||||||| ||| |||||||||||||||||||||||||| || | Sbjct 4767 AGTTGAGGGTATCTTCTTCTCCGGCTCCTTCGCCTCCATCTTCTGGCTCAAGAAGCGTG- 4709 Query 42782 GTCG-ATGCCCGGACTCACCTTCTCGAACGAACTCATCAGCAGGGACGAGGGGCTGCATA 42840 ||| |||||||||||||||||||| ||||| |||||| | ||||| || || || | Sbjct 4708 GTCTTATGCCCGGACTCACCTTCTCCAACGAGCTCATCTCACGCGACGAAGGTCTTCACA 4649 Query 42841 GGGACTTTGCCTGCCTCCTGTTCTCGAGCCACCTCAGGCACAAGCCCTCGAA---GGAGC 42897 ||||| ||||||||||| ||| || ||||||| | |||| | || | ||| Sbjct 4648 CCGACTTCGCCTGCCTCCTCTTC---AGTCACCTCA---AGAAGCGCGCGCACCCGGATA 4595 Query 42898 GGGTCCGGGCCATCATCACGGAGGCCGTGGAGATCGAGAAGGAGTTCCTCACGCA-GTCG 42956 |||| |||||| | ||||| || || |||||||| |||||||||| ||| | | Sbjct 4594 CCGTCCTCAAAATCATCGCCGAGGCAGTCGAAATCGAGAAAGAGTTCCTCA-GCACGGCT 4536 Query 42957 CTGCCCGTGTCCCTGGTCGGCATGAAC 42983 || || || || ||||||||||| Sbjct 4535 CTACCATGTTCTCTCATCGGCATGAAC 4509 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 944177942277360