Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilago_20xerochloae_20[genbank_20GCA_5F001736075.1_202016-09-20] 13,661 sequences; 24,230,715 total letters Query= NC_009333.1 Length=137969 Score E Sequences producing significant alignments: (Bits) Value seq9 93.3 4e-14 >seq9 Length=211508 Score = 93.3 bits (102), Expect = 4e-14 Identities = 261/397 (66%), Gaps = 3/397 (1%) Strand=Plus/Plus Query 20363 AATTGACATAACAAGTGACAGGGCGGAAGCGCCATCAACGACAAGTCCGCCGGGTTCCAC 20422 |||||||| |||| |||||| || ||||| ||||| | || | || || ||||| Sbjct 209980 AATTGACAGAACATGTGACAAGGTGGAAGAGCCATGAGGGAGAGATCTTTAGGATTCCAT 210039 Query 20423 GCACACATAATGATTCTTCTATCGTGCGGATTATTTTTTATTAAATCCACAATGTA-CGA 20481 || | | | |||||| | |||| ||||| || || || || | | | ||| Sbjct 210040 GCGCTGAGCAAGATTCTGCGATCGGTGGGATTGTTCTTGATCTTGTCGATGACATCGCGA 210099 Query 20482 CAATTGGTCAAACCCCTGGCCTGTATAGTCAGCATCCGCGTCCACGTACGCCGCCCCAAA 20541 | ||| || | || ||||| || ||||| | || ||| ||| | || ||||| Sbjct 210100 -AGTTGATCGACGCCTTGGCCAGTGTAGTCGGTGTCACAGTCTTTGTATTCGGCGCCAAA 210158 Query 20542 GTGCCTCCACTGGAAACCGTAAACAGGTCCCAAATCCCCCTCCCTTCTGTGCGCCAGGCC 20601 ||| | ||| ||||||||||| || || |||| ||| || || ||||||||| || || Sbjct 210159 GTGACGCCATTGGAAACCGTAGACTGGACCCAGATCACCTTCTCTTCTGTGCTGCAATCC 210218 Query 20602 GCGCCCGGCCAGGAACTCCCTGGAGCCATTTTTGTCCCATATCTTGACTCCTGTTCTTGA 20661 || | | |||||||| | || || || |||||| || | || ||| | || Sbjct 210219 TCGAGAGTCAAGGAACTCTCGTGACCCGTTGCCGTCCCAGATGTGCACACCTTTGTCTGT 210278 Query 20662 AAGCTCCCTGGAGTCAGTACTCCCCTTCAGAAACCAAAGCAGCTCTTGCACTACGCCTCG 20721 ||| | ||||||| || | || | ||||| || ||||| | | || || || Sbjct 210279 GAGCAGCTTGGAGTCGGTCTTTCCAGCAACGAACCAGAGTAGCTCCTCGAGAACACCGCG 210338 Query 20722 CCAAAACACCCGCTTTGTGGTTAGTA-AGGGAAAGTG 20757 | || || |||||||| || || | ||| | |||| Sbjct 210339 GAAGAAGACACGCTTTGTTGTGAGCAGAGGAAGAGTG 210375 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 441297430077240