Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilago_20xerochloae_20[genbank_20GCA_5F001736075.1_202016-09-20] 13,661 sequences; 24,230,715 total letters Query= NC_009898.1 Length=368683 Score E Sequences producing significant alignments: (Bits) Value seq23 158 3e-33 seq53 116 9e-21 seq113 86.0 1e-11 >seq23 Length=140287 Score = 158 bits (174), Expect = 3e-33 Identities = 171/227 (75%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| || || | || |||||||| | |||||||| || ||||| || ||||| | | Sbjct 2003 CCACCACGAAGACGGAGGACGAGATGCAAGGTGCTTTCCTTCTGGATGTTGTAGTCCGAG 1944 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 || || || |||||||| | || ||||| || ||||| |||||||| || | || Sbjct 1943 AGGGTTCGGCCGTCTTCGAGCTGCTTTCCAGCAAAGATAAGACGCTGCTGGTCAGGGGGA 1884 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426 || ||||| || |||||||| || || || ||||| || |||| || || || ||| Sbjct 1883 ATGCCTTCCTTGTCCTGGATCTTGGCCTTAACGTTGTCGATAGTGTCCGAGGACTCGACT 1824 Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 |||||||| || ||||| ||||||| ||||||||||| |||||||| Sbjct 1823 TCGAGCGTAATGGTCTTGCCGGTCAAGGTCTTGACGAAAATCTGCAT 1777 Score = 120 bits (132), Expect = 7e-22 Identities = 141/191 (74%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 || |||||||| || ||||| | || || ||||| || || | || ||||| || || Sbjct 1739 TCCTTTTGGATGTTGTAGTCCGAAAGAGTTCGTCCATCCTCAAGCTGCTTTCCGGCAAAA 1680 Query 288343 ATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTT 288402 || |||||||| ||| ||||| || || || ||||| || || || || ||||| Sbjct 1679 ATGAGACGCTGCTGATCGGGAGGGATCCCCTCCTTGTCCTGAATCTTGGCCTTGACGTTG 1620 Query 288403 TCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACG 288462 || || | ||| || || || ||||| ||||| ||||| |||||||||||||| ||| Sbjct 1619 TCAATGGTGTCGGAAGACTCAACCTCGAGGGTGATGGTCTTACCGGTCAGAGTCTTTACG 1560 Query 288463 AATATCTGCAT 288473 || |||||||| Sbjct 1559 AAGATCTGCAT 1549 Score = 95.1 bits (104), Expect = 3e-14 Identities = 139/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 288277 GTGCTTTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCT 288336 |||||||| || || || || || || | || ||||| |||||||| || || || || Sbjct 2201 GTGCTTTCCTTCTGAATGTTGTAATCCGAAAGGGTGCGACCGTCTTCCAACTGCTTACCA 2142 Query 288337 GCGAAGATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTC 288396 || ||||| || || || ||| || || || || ||||||||||| || || || Sbjct 2141 GCAAAGATGAGTCGTTGCTGATCGGGAGGAATACCCTCCTTATCCTGGATCTTGGCCTTG 2082 Query 288397 ACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTC 288456 || || || || | || || || ||||| | ||||| ||||| || || || ||| Sbjct 2081 ACATTGTCGATCGTGTCCGAAGACTCGACTTCCAAAGTGATGGTCTTTCCTGTGAGCGTC 2022 Query 288457 TTGACGAATATCTGCAT 288473 ||||| || || ||||| Sbjct 2021 TTGACAAAGATTTGCAT 2005 >seq53 Length=94643 Score = 116 bits (128), Expect = 9e-21 Identities = 153/212 (72%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 288262 AGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCT 288321 || || ||||| | ||| || || || || || ||||||| || || || || ||| Sbjct 56337 AGGACAAGATGCAAGGTGGACTCCTTCTGAATGTTGTAGTCGGAAAGGGTACGGCCATCT 56396 Query 288322 TCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCC 288381 || | || || ||||| ||||| |||||||| || | || || || || || ||| Sbjct 56397 TCAAGCTGCTTGCCTGCAAAGATAAGACGCTGCTGGTCAGGAGGAATGCCCTCCTTGTCC 56456 Query 288382 TGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTC 288441 || || || || || ||||| || |||| || || || ||||||||||| || ||| Sbjct 56457 TGAATCTTGGCCTTGACGTTGTCGATAGTGTCCGAGGACTCGACTTCGAGCGTAATGGTC 56516 Query 288442 TTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || ||||||| ||||||||| || |||||||| Sbjct 56517 TTGCCGGTCAAAGTCTTGACAAAGATCTGCAT 56548 >seq113 Length=59678 Score = 86.0 bits (94), Expect = 1e-11 Identities = 247/370 (67%), Gaps = 10/370 (3%) Strand=Plus/Plus Query 325964 ACGATAGGCGTGATGAACTTCTTCAAG-AACCCTGGAATTTCTAGAAGATTAGGGAAACA 326022 ||||| || |||||||||| | |||| || || ||||| | || || ||| | | Sbjct 56748 ACGATGGGAGTGATGAACT-CGACAAGGAAACCGGGAATCTTGAGCAGCGATGGGTAGAA 56806 Query 326023 GCTATGGAAAAAGTTCATGACGAGACCA--GAAATGTGAGTTCCGTCAACATCCGCGTCG 326080 | | || ||||| |||| |||||| || |||||| || || |||| ||| Sbjct 56807 GTGGTCGAGGAAGTTGATGATGAGACCCTTGATATGTGAA--CCATCGTGATCCTGATCG 56864 Query 326081 GTCATGATCATCACATGACCGTAACG-AAGCGAGGACGTGTCTTTGTACACTTTACCGGT 326139 ||||||||||| | | ||||| || |||| | | ||| || || ||| Sbjct 56865 GTCATGATCATGATACTGCCGTATCGCAAGCTACTA-ACGTCAAGATATTGCTTGCCGTG 56923 Query 326140 TTGAAGGCCGAGAATTTGTTTGAGCGCTGTGATTTCTTCGTTCTTCGTGATGCTTGCCAC 326199 |||||| |||||||||| ||||| ||| |||||||| |||||||| |||| || | | Sbjct 56924 TTGAAGACCGAGAATTTCTTTGATGGCTTTGATTTCTGCGTTCTTCATGAT-CTGGTCGT 56982 Query 326200 G-GATGCATCGCGGACGTTCAATAGTTTTCCACGAAGAGGGAACACTCCATATCTCTCGC 326258 | | || || || ||||| | || || ||||| || || || || || || | || | Sbjct 56983 GAGTGGCCTCACGAACGTTGAGAAGCTTACCACGGAGCGGAAAGACACCGTAGTTGTCAC 57042 Query 326259 GACCGACCACGGACAGCCCTGCGATTGCAAGTGTCGCTGCGGAATCCCCCTCCGTCAGAA 326318 |||| || | || || || | || || | | ||||| || || || || |||| Sbjct 57043 GACCCACTTCAACAAGGCCGGCAACAGCGAGAGCCTTGGCGGAGTCACCTTCGGTGAGAA 57102 Query 326319 TGAGAGTGCA 326328 |||| || || Sbjct 57103 TGAGTGTACA 57112 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1179447923247158