Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilago_20xerochloae_20[genbank_20GCA_5F001736075.1_202016-09-20] 13,661 sequences; 24,230,715 total letters Query= NC_010191.2 Length=186713 Score E Sequences producing significant alignments: (Bits) Value seq36 239 5e-58 seq113 145 9e-30 seq67 102 1e-16 >seq36 Length=116313 Score = 239 bits (264), Expect = 5e-58 Identities = 906/1395 (65%), Gaps = 35/1395 (3%) Strand=Plus/Plus Query 113942 TAGATATTGGTCGTGTATGGCTCAAAGCACTCATTGTTACCCAAGATTTGGGCGGTGGAG 114001 ||||| |||| ||||| ||||| ||||| || ||| ||||||||| || ||||| Sbjct 37901 TAGATGTTGGAGGTGTAGGGCTCGAAGCATTCGTTGAAACCCAAGATCTGACTTGTGGAT 37960 Query 114002 GCTGTGGGCATGGGTGCCATGAGAAGGCTGTTACGGAGACC---CTTTTCCCTAATGCGT 114058 || || |||||||| || | | || ||| || ||||| ||| | | || Sbjct 37961 GCGGTAGGCATGGGAGCGAGCAAGAGCGAGTTGCGAAGACCGTGCTTGGCGATCTTGG-- 38018 Query 114059 TCCTTGAGGGCGTCCCAGTCGTA--GTTGAGCTTTGTCTCCCCCTGCCACATATCAAACT 114116 ||||||| | ||||||| | | | | | | || |||||| || ||| Sbjct 38019 -CCTTGAGCGAAGCCCAGTCCCAAAGATCGGAAGGGGTAACACC--CCACATGTCGTACT 38075 Query 114117 GGAGGATACCTTGGGAGGCTGGCGATCCCTCAAATGTCTCGTATGGGCCCTCAACCTCCG 114176 |||| ||| |||||||| || || || | | |||||||| | ||| | ||| | Sbjct 38076 GGAGTTCACCCTGGGAGGCAGGGGAACCGGCGTAGGTCTCGTAGGTGCCATGCTCCTGGG 38135 Query 114177 CCAATTCGGA-GCTCGCCTCGAGGGCTGCGTGATACATTGTCTCAAAAATGCGAGCATTC 114235 |||| ||| | | |||| ||||| || ||||| || || ||||| || || | | ||| Sbjct 38136 CCAACTCGCACGATCGC-TCGAGAGCGGCGTGGTAGATGGTCTCGAAGATCTGGACGTTC 38194 Query 114236 ATTGCCTTG-GCCTCGTCGGAATCAAACGCGAGTCGGCACAAAATAAATACATCCGCGAG 114294 | || | |||||| || ||||| ||| | | || || |||| ||||| Sbjct 38195 AA-GCGACGAGCCTCGGGCGACTCAAAGGCGTAACCCATGATCATGAAGGCATCGGCGAG 38253 Query 114295 ACCTTGGACACCGAGGCCAATTGGGCGATGTCTCATATTAGACTTTCGAGCGGTCTCCAC 114354 ||| |||||||||| ||||| ||||| || | ||| ||||| ||||| ||| || Sbjct 38254 ACCCTGGACACCGATACCAATGGGGCGGTGACGCATGTTAGAACGACGAGCCTCCTCAAC 38313 Query 114355 GGGATAAAAATTCCTATCGATAACCCTATTTAGATTTTTGGTGACAACCTTTGTGATTTC 114414 || || | || ||||||| | | || | || ||| || | |||| | | || Sbjct 38314 AGGGTAGTAGTTGATATCGATGATTTTGTTCAAGTTCTTGCAGATAGCCTTGGCAACCTC 38373 Query 114415 ATG-AAGCTTTTCGTAATCAAA-ACTGCGAGTCTCTTCATTGACATACTTAGGAAGGGCG 114472 || || | || | | || | || | || | | || | | ||||| ||| Sbjct 38374 GTGCAAACGCTT-GAAGTCGTAGACCTTG-GTAACGGGGTCGATGAAGGTGGGAAGAGCG 38431 Query 114473 ATTGACGCCAGATTACACACAGAGGTCTCATCCTTATCAGTGTACTCTATAATTTCCGTA 114532 || || || || || || |||| |||||| | || ||||||| || || || || Sbjct 38432 ATGGAGGCAAGGTTGCAAACAGCAACCTCATCGGGAGCACTGTACTCGATGATCTCAGTG 38491 Query 114533 CACAAATTTGAACTCTTAATGGTGCCCAAGTTCTTTTGATTTGACTTTGTGTTACACGCA 114592 ||||| || || | ||| || || || | |||||| || || ||||| ||| || Sbjct 38492 CACAAGTTGGAGCACTTGATAGTACCGAGGTTCTTCTGGTTGGACTTGCGGTTGGCAGCG 38551 Query 114593 TCCTTGTAAAGCATGTATGGCGTCCCCGTCTCCGTTTGGGACTTGAGAATAGCCTTCCAG 114652 |||||||| || ||| | || | || ||||| || || |||| ||| || || | |||| Sbjct 38552 TCCTTGTAGAGGATGAAGGGGTTACCGGTCTCGGTCTGCGACTCGAGGATGGCGTACCAG 38611 Query 114653 A-CATCGGCGGCTGGCACAGTGGCGTTGGCTCGCCCCTCCTCCTCGTACTTTGTGTAGAG 114711 | | || | | || | || ||| || | || || || ||||||| |||||| Sbjct 38612 AGCTTCTGAGCCTTG-ACGGTGCGCTTTGAGCGACCTTCGGCCTCGTAACGCTCGTAGAG 38670 Query 114712 GGCTTCAAACTCTTCACCCACGGCCTCTGAGAGCCCTGGTGCCTTATCTGGGCAGAAGAG 114771 || ||||||||||| | || | || || || || | ||||| | ||| Sbjct 38671 ACGCTCGAACTCTTCACCGTAGCAGTCGGCAAGACCGGGGCACTCGTTGGGGCACATGAG 38730 Query 114772 AGACCATTGACCACCCTCCTCAACACGCTTCATGAAGAGGTCTGGGATCCAGAGAGCTGA 114831 ||||| | ||| || |||||| | |||||||||||| || || | ||||||||| | Sbjct 38731 CGACCAATCACCGTTCTGCTCAACCCTCTTCATGAAGAGATCGGGAACCCAGAGAGCGTA 38790 Query 114832 GAAGAGATCCCGACAGCGAGCTTCTTCATCCCCCTGATTGAGACGCAACTCCAAAAAGTC 114891 |||||| || || ||| ||||||| | || || || ||||| || | || || Sbjct 38791 GAAGAGTTCACGGGCACGAACTTCTTCCTTACCGTGGTTCTTGCGCAAGTCGAGGAACTC 38850 Query 114892 CATGATATCCGCGTGCCACGGTTCCAGGTACACCGCGATTGACCCCTTACG---ACGACC 114948 | || ||||| |||||| || || | ||| | || | | || ||| ||| Sbjct 38851 AAAGACATCCGAGTGCCAAGGCTCAATGTAGATGGCAAAGGCACCGGGACGCTTGTTACC 38910 Query 114949 AGCCTGGTTTACATACCTCGCTGTGGCATTAAATACGCGAAGCATTGGAATGATACCAT- 115007 | |||||| || || | || ||| || || || |||||||| |||| |||||| | Sbjct 38911 ACCCTGGTCGACGTAACGGGCGGTGTTGTTGAAGACACGAAGCATGGGAACGATACCGTT 38970 Query 115008 -CAGATTGGCCATTTGTCCCCCGAA--TACGAGACTTATTGGCTCTGACATCA-TGGATG 115063 | || || || || || || || ||| | | | ||| || || || ||| Sbjct 38971 GCTGA--CACCGTTGGTGCCGGCAATGTAGGAGCC--AGTACCTC-GAATGCAGTGAATG 39025 Query 115064 TGCATACCAATACCCCCTGCCCACTTTGAGATTTGCGCGCACTCCGTGAGACTGCCGTAG 115123 | || |||||| || || || ||| ||||| || || | |||| || |||| Sbjct 39026 TTCAAACCAATGCCACCGGCGGTCTTGGAGATCATGGCACAGGTCTTGAGGGTGTCGTAA 39085 Query 115124 ATCCCGTCGATCGAGTCACCCTTATTTGCGATAAGGAAGCAGCTCGACATTTGTGGCCTT 115183 || ||||||||||||||| |||| | | | |||||| ||| ||| | ||||| Sbjct 39086 ATGCCGTCGATCGAGTCATCCTTCATGGTAACAAGGAAACAGGACGAGAGCTGTGGGTGG 39145 Query 115184 GGTGTACCAGCGTTGAAGAGGGTTGGTGTCGCGTGGATGAACATAC-CTTGGGACATCTT 115242 || ||||||||||||||||||||||| | |||| || || ||| ||| ||||| Sbjct 39146 GGAGTACCAGCGTTGAAGAGGGTTGGCGAGGCGT-GAGTAAAGTACTTTTGCGACATGAG 39204 Query 115243 ATCGTAGGTCTCCAAGACGGCGGGAATGTCTTCCCCGTGAATACCGATCGAGACCCGCAT 115302 | ||| ||||| | | || ||||| | ||||||||||| | | || ||||| Sbjct 39205 GTTGTACGTCTCGATGGCGCTCTCGATGTCCTGGCCGTGAATACCAACAGCAACACGCAT 39264 Query 115303 AAACATGTATTGGGG 115317 | ||||| ||||| Sbjct 39265 GAGCATGTGCTGGGG 39279 >seq113 Length=59678 Score = 145 bits (160), Expect = 9e-30 Identities = 296/430 (69%), Gaps = 20/430 (5%) Strand=Plus/Plus Query 172576 CTTGAGGAGGGATGGCCAGAAGTAGTGGATCATATTCAGGATGAGACCCTTAATGTGTGA 172635 |||||| || ||||| |||||| || || | || | |||||||||||| || ||||| Sbjct 56786 CTTGAGCAGCGATGGGTAGAAGTGGTCGAGGAAGTTGATGATGAGACCCTTGATATGTGA 56845 Query 172636 ACCATCGTTATCCGCATCCGTCATAATCATAAGCCGACCATAGCG-AAGCTCGGAAACAT 172694 |||||||| |||| ||| ||||| ||||| | | || || || ||||| ||| | Sbjct 56846 ACCATCGTGATCCTGATCGGTCATGATCATGATACTGCCGTATCGCAAGCT-ACTAACGT 56904 Query 172695 CTTGATACTCCTTACCCTGTTGAAGACCCAAGATCTTCTTGAGATCATTGAACTCTTGGT 172754 | |||| | ||| || ||||||||||| | || | |||| | |||| ||| || Sbjct 56905 CAAGATATTGCTTGCCGTGTTGAAGACCGAGAATTTCTTTGATGGCTTTGATTTCTGCGT 56964 Query 172755 T-----TGATGTGAGTTGCGCCACTGAAGCATCGCGGACATTTTTACACTTCCCACGGAG 172809 | |||| || || || | || || || || || || | ||| |||||||| Sbjct 56965 TCTTCATGATCTG-GT--CGTGAGTG--GCCTCACGAACGTTGAGAAGCTTACCACGGAG 57019 Query 172810 AGGGAACACACCGTAGTGATCACGACCAACCACAGAAAGACCAGCAACTGCGAGGGTCTT 172869 || || |||||||||| |||||||| || || ||| || ||||| ||||| | ||| Sbjct 57020 CGGAAAGACACCGTAGTTGTCACGACCCACTTCAACAAGGCCGGCAACAGCGAGAGCCTT 57079 Query 172870 CGCGGAATCACCCTCCGTCACGATGAGCGTACACTTTCCAGATTGTGCCGTC-CCCGCCT 172928 ||||| ||||| || || | ||||| ||||| | || || | | | | || || | Sbjct 57080 GGCGGAGTCACCTTCGGTGAGAATGAGTGTACAGTCCTTAGCTT-TCCTGCCACCTGCAT 57138 Query 172929 TGTTCGCATCGTCCAACTTGGGAATACCAGTAATTTTGG---ACTTGCGGGCACCATCTG 172985 |||| ||||| || | |||||| || || || ||| |||| | ||| || | Sbjct 57139 TGTTGGCATCTTCGAGCTTGGGGATGTTGGTGATCCTGGTACGCTTGTG---ACCGTCGG 57195 Query 172986 TCTTCTTGAG 172995 |||||||||| Sbjct 57196 TCTTCTTGAG 57205 >seq67 Length=86059 Score = 102 bits (112), Expect = 1e-16 Identities = 112/149 (75%), Gaps = 0/149 (0%) Strand=Plus/Plus Query 126058 GTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGTCCTGGCATGAGACC 126117 ||| ||||| ||||| || |||||||| || || |||||| ||||| ||||| ||||| Sbjct 4650 GTGAAGACCTTCGTCGCGTGAGATGAGCTCGTTGGAGAAGGTGAGTCCGGGCATAAGACC 4709 Query 126118 CCGCTTCTTCAACCAGAAAATCGCACAAAATGAACCCGAGAAGAAGATTCCCTCCACACA 126177 |||||||| | |||||| || | || || || ||||||||||| ||||| || Sbjct 4710 ACGCTTCTTGAGCCAGAAGATGGAGGCGAAGGAGCCGGAGAAGAAGATACCCTCAACTGC 4769 Query 126178 CGCGAACGCAAAGAGACGCTCAGCAAAGG 126206 || || |||| |||||| || || |||| Sbjct 4770 GGCAAAGGCAACGAGACGTTCGGCGAAGG 4798 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 597251594405880