Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilago_20xerochloae_20[genbank_20GCA_5F001736075.1_202016-09-20] 13,661 sequences; 24,230,715 total letters Query= NC_010240.1 Length=169794 Score E Sequences producing significant alignments: (Bits) Value seq23 143 3e-29 seq53 116 4e-21 seq52 93.3 5e-14 seq100 89.7 6e-13 >seq23 Length=140287 Score = 143 bits (158), Expect = 3e-29 Identities = 174/233 (75%), Gaps = 8/233 (3%) Strand=Plus/Minus Query 41980 GACCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAG 42039 |||| || | | |||||| || | ||||| ||||||||||| |||||||||||||||| Sbjct 2461 GACCGCCACGCAGACGCAAAACTAGGTGCAAGGTGCTCTCCTTCTGAATATTGTAATCAG 2402 Query 42040 CCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTG 42099 |||||| || | || || | ||| |||||||| || || | ||||||||||||| | Sbjct 2401 ACAGAGTTCGTCCATCCTCCAACTGTTTACCAGCAAAGATCAAACGCTGCTGGTCGGGAG 2342 Query 42100 GCACGCTCTCCTTGTCCATGATTTTTTG-TTTGAGCGTCGCCACCGTGTC---GCTCGAT 42155 | | | ||||||||| ||| | || | ||||| | | | ||||| |||| Sbjct 2341 GAATACCTTCCTTGTCC-TGAATCTTGGCTTTGACATTGTCAATGGTGTCCGAGCTC--- 2286 Query 42156 TCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 ||||| |||| ||||| |||||||| || |||||||| |||||||| ||||| Sbjct 2285 TCCACCTCGAGTGTGATCGTTTTGCCAGTAAGCGTCTTGACAAAGATCTGCAT 2233 Score = 132 bits (146), Expect = 5e-26 Identities = 166/228 (73%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 41981 ACCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGC 42040 ||| |||| || ||||| || | ||||| ||||| ||||| ||||| |||||||| | Sbjct 2232 ACCACCTCGCAATCGCAAGACAAGGTGCAAGGTGCTTTCCTTCTGAATGTTGTAATCCGA 2173 Query 42041 CAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGG 42100 || || || |||| || | |||||||||||| || |||||||| ||||| |||| || Sbjct 2172 AAGGGTGCGACCGTCTTCCAACTGCTTACCAGCAAAGATGAGTCGTTGCTGATCGGGAGG 2113 Query 42101 CACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCAC 42160 | | |||||| ||| ||| || |||| | | | |||||| || || || Sbjct 2112 AATACCCTCCTTATCCTGGATCTTGGCCTTGACATTGTCGATCGTGTCCGAAGACTCGAC 2053 Query 42161 ATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 || | |||||||| || || || |||||||| |||||||||||||| Sbjct 2052 TTCCAAAGTGATGGTCTTTCCTGTGAGCGTCTTGACAAAGATTTGCAT 2005 Score = 96.9 bits (106), Expect = 4e-15 Identities = 146/205 (71%), Gaps = 2/205 (1%) Strand=Plus/Minus Query 42005 ATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTG 42064 |||||| ||||| ||||| || || ||||| || | || || || |||| || ||||| Sbjct 1980 ATGCAAGGTGCTTTCCTTCTGGATGTTGTAGTCCGAGAGGGTTCGGCCGTCTTCGAGCTG 1921 Query 42065 CTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTT 42124 ||| ||||| || || || ||||||||||| | || | || ||||||||| || | | Sbjct 1920 CTTTCCAGCAAAGATAAGACGCTGCTGGTCAGGGGGAATGCCTTCCTTGTCC-TGGATCT 1862 Query 42125 TTGTTTGAGCGTCG-CCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCG 42183 | | | | ||| | | | ||||| || || || |||| ||| ||||| ||||| | Sbjct 1861 TGGCCTTAACGTTGTCGATAGTGTCCGAGGACTCGACTTCGAGCGTAATGGTCTTGCCGG 1802 Query 42184 TTAGCGTCTTTACAAAGATTTGCAT 42208 | | ||||| || || || ||||| Sbjct 1801 TCAAGGTCTTGACGAAAATCTGCAT 1777 >seq53 Length=94643 Score = 116 bits (128), Expect = 4e-21 Identities = 143/193 (74%), Gaps = 2/193 (1%) Strand=Plus/Plus Query 42017 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 42076 |||||| || || ||||| || | || || || | || || ||||||||||||||||| Sbjct 56585 CTCCTTCTGGATGTTGTAGTCCGAGAGGGTGCGGCCATCTTCGAGCTGCTTACCAGCGAA 56644 Query 42077 TATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTG-TTTGAGCG 42135 |||||||||||||| |||| ||| | || ||||||||| ||| | || | |||| Sbjct 56645 GATGAGTCGCTGCTGATCGGGTGGGATGCCTTCCTTGTCC-TGAATCTTGGCCTTGACAT 56703 Query 42136 TCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTA 42195 | | | ||||| || || || |||| |||||||| ||||| || || ||||| | Sbjct 56704 TGTCGATGGTGTCCGAGGACTCAACCTCGAGGGTGATGGTCTTGCCGGTGAGGGTCTTGA 56763 Query 42196 CAAAGATTTGCAT 42208 ||||||| ||||| Sbjct 56764 CAAAGATCTGCAT 56776 Score = 105 bits (116), Expect = 7e-18 Identities = 150/206 (73%), Gaps = 4/206 (2%) Strand=Plus/Plus Query 42005 ATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTG 42064 |||||| ||| |||||| ||||| ||||| || | || || || | || || ||||| Sbjct 56345 ATGCAAGGTGGACTCCTTCTGAATGTTGTAGTCGGAAAGGGTACGGCCATCTTCAAGCTG 56404 Query 42065 CTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTT 42124 ||| || || || || || ||||||||||| | || | || |||||||||| ||| | | Sbjct 56405 CTTGCCTGCAAAGATAAGACGCTGCTGGTCAGGAGGAATGCCCTCCTTGTCC-TGAATCT 56463 Query 42125 TTG-TTTGAGCGTCG-CCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCC 42182 | | |||| ||| | | | ||||| || || || |||| ||| ||||| ||||| Sbjct 56464 TGGCCTTGA-CGTTGTCGATAGTGTCCGAGGACTCGACTTCGAGCGTAATGGTCTTGCCG 56522 Query 42183 GTTAGCGTCTTTACAAAGATTTGCAT 42208 || | ||||| |||||||| ||||| Sbjct 56523 GTCAAAGTCTTGACAAAGATCTGCAT 56548 >seq52 Length=95535 Score = 93.3 bits (102), Expect = 5e-14 Identities = 139/195 (71%), Gaps = 2/195 (1%) Strand=Plus/Plus Query 42018 TCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAAT 42077 ||||| || || ||||| || | || || || | || || ||||||||||| ||||| Sbjct 17659 TCCTTCTGGATGTTGTAGTCCGAGAGGGTACGACCATCTTCGAGCTGCTTACCGGCGAAG 17718 Query 42078 ATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTC 42137 ||||| |||||||| || | || | | ||||||||| ||| || |||| ||| Sbjct 17719 ATGAGACGCTGCTGATCAGGGGGAATACCTTCCTTGTCCTGGATCTTGGCCTTGA-CGTT 17777 Query 42138 G-CCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTAC 42196 | | | ||||| || || || |||| |||||||| || ||||| || || || || Sbjct 17778 GTCGATGGTGTCCGAAGACTCGACCTCGAGGGTGATGGTCTTACCCGTGAGGGTTTTAAC 17837 Query 42197 AAAGATTTGCATTTT 42211 |||||| ||||| || Sbjct 17838 AAAGATCTGCATCTT 17852 >seq100 Length=67640 Score = 89.7 bits (98), Expect = 6e-13 Identities = 121/166 (73%), Gaps = 2/166 (1%) Strand=Plus/Minus Query 42017 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 42076 |||||| || || ||||| || | || || || |||| || ||||||||||| ||||| Sbjct 61170 CTCCTTCTGGATGTTGTAGTCCGAGAGGGTGCGGCCGTCCTCGAGCTGCTTACCGGCGAA 61111 Query 42077 TATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 42136 ||||| ||||||||||||| || | | |||||||||| ||| || |||| ||| Sbjct 61110 GATGAGACGCTGCTGGTCGGGGGGGATACCCTCCTTGTCCTGGATCTTGGCCTTGA-CGT 61052 Query 42137 CG-CCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCC 42181 | | | |||||| || ||||| || | |||||||| || || Sbjct 61051 TGTCGATGGTGTCGGAAGACTCCACCTCAAGGGTGATGGTCTTACC 61006 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 543120039624240