Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilago_20xerochloae_20[genbank_20GCA_5F001736075.1_202016-09-20] 13,661 sequences; 24,230,715 total letters Query= NC_011183.1 Length=154641 Score E Sequences producing significant alignments: (Bits) Value seq36 282 4e-71 >seq36 Length=116313 Score = 282 bits (312), Expect = 4e-71 Identities = 1106/1717 (64%), Gaps = 44/1717 (3%) Strand=Plus/Minus Query 93718 TACGATTACTTTGCCTTCAAAACTCTGGAGAAGTCGTACCTCCTCAAGATGGATGGCAGG 93777 ||| | | ||| | |||||| ||||| ||| || ||| | ||| || | |||| | Sbjct 39351 TACAACTTCTTCGGCTTCAAGACTCTCGAGCGTTCCTACTTGCTCCGCATCAACGGCAAG 39292 Query 93778 GTTTCCGAGCGACCGCACCAGCTGCTGATGCGCGTCGCCATCGGGATTCACGGCCACGAC 93837 ||| | ||||| || || || |||| ||||| || || | || ||||||||||| ||| Sbjct 39291 GTTGCTGAGCGTCCCCAGCACATGCTCATGCGTGTTGCTGTTGGTATTCACGGCCAGGAC 39232 Query 93838 ATGCCGAATGTTTTGCGGGCTTTCAGAGACATGCGGGACAAGAGGTATACCATGGCCACC 93897 || || | | | | | || |||| | | ||| | ||| ||| | Sbjct 39231 ATCGAGAGCGCCATCGAGACGTACAACCTCATGTCGCAAAAGTACTTTACTCACGCCTCG 39172 Query 93898 CCGACCCTGTTCAACGCGGGGACCCCGGTGCCACAGATGTCTTCGTGTTTCCTGATGACG 93957 || ||||| |||||||| || || || |||||| | || || |||||||| | || Sbjct 39171 CCAACCCTCTTCAACGCTGGTACTCCCCACCCACAGCTCTCGTCCTGTTTCCTTGTTACC 39112 Query 93958 AACAAGGCCGACTCCATCTCCGGAATTTTCGACAGCCTCAAGGACTGTGCGACCATCTCA 94017 | |||| ||||| ||| ||| |||| ||||| ||||||| |||||| | ||||| Sbjct 39111 ATGAAGGATGACTCGATCGACGGCATTTACGACACCCTCAAGACCTGTGCCATGATCTCC 39052 Query 94018 AAATACGCGGGGGGAATCGGGATCAGTGTCCACGACGTACGTGCCAGGGGTTCCTACATC 94077 || ||| || || || || | | | ||| | | || | | || |||||||| Sbjct 39051 AAGACCGCCGGTGGCATTGGTTTGAACATTCACTGCATTCGAGGTACTGGCTCCTACATT 38992 Query 94078 CGCGGTACCAATGGCACCTCCAACGGCCTCGTCCCTATGCTCCGGGTCTTCAACAACGCG 94137 ||| ||||| || | |||||| |||| || ||||| || |||||||||||| | Sbjct 38991 GCCGGCACCAACGGTGTCAGCAACGGTATCGTTCCCATGCTTCGTGTCTTCAACAACACC 38932 Query 94138 GCGCGCTACGTGGACCAGGGTGGTGGGAGGAGGAAGGGTTCTTTCGCGGTCTATCTCGAG 94197 || || ||||| |||||||||||| | | | ||| | || || |||| | ||| Sbjct 38931 GCCCGTTACGTCGACCAGGGTGGTAACAAGCGTCCCGGTGCCTTTGCCATCTACATTGAG 38872 Query 94198 CCCTGGCACGCGGACGTGCAGGCTTTCATCGACCTGCGAAAGAACCACGGCAACGATCTG 94257 || |||||| |||| || | ||| ||||| |||| ||||||||||| || || Sbjct 38871 CCTTGGCACTCGGATGTCTTTGAGTTCCTCGACTTGCGCAAGAACCACGGTAAGGAAGAA 38812 Query 94258 GAGAGGGCCAGAGACCTCTTCTACGCTCTCTGGGTGCCAGACCTTTTTATGAAACGCGTC 94317 | | ||| | || |||||||||||||||||||| || || || || ||||| | || Sbjct 38811 GTTCGTGCCCGTGAACTCTTCTACGCTCTCTGGGTTCCCGATCTCTTCATGAAGAGGGTT 38752 Query 94318 GAGAAAAACTCCGCCTGGAGTCTTTTTTGTCCCAATGAATGTCCCGGACTGTCCGACGTT 94377 ||| | ||| | ||| || | || ||||| || || ||||| || ||||| Sbjct 38751 GAGCAGAACGGTGATTGGTCGCTCATGTGCCCCAACGAGTGCCCCGGTCTTGCCGACTGC 38692 Query 94378 TGTGGATCGCGTTTTGAAGACT-TGTATGCTCGTTACGA-ATCGCAGG----GCAAGGCC 94431 | || | | || || | | || | |||||||| || ||| ||| || Sbjct 38691 TACGG-TGAAGAGTTCGAGCGTCTCTACGAGCGTTACGAGGCCGAAGGTCGCTCAAAGC- 38634 Query 94432 AGGAAGGTTATGGATGCTAGGAAGCTGTGGGATCAGATCGTGGACGTACAGGTGGAGACG 94491 | | || | | ||| |||||| ||| | ||| | || ||| ||||| Sbjct 38633 -GCACCGTCA---AGGCTCAGAAGCTCTGGTACGCCATCCTCGAGTCGCAGACCGAGACC 38578 Query 94492 GGTACGCCCTACATCTTGTTCAAGGACTCTGTCAACGCCAAGTCCAACCAGCAGCACCTC 94551 |||| |||| |||| | | ||||||| ||| |||| ||||||||||||| || ||||| Sbjct 38577 GGTAACCCCTTCATCCTCTACAAGGACGCTGCCAACCGCAAGTCCAACCAGAAGAACCTC 38518 Query 94552 GGGGTGATCAAGAGCTCGAATCTGTGCACCGAGATTGTCGAGTATACTTCTCCGGACGAG 94611 || |||||| |||| || ||||||| ||||| ||||||| | | |||| || ||| Sbjct 38517 GGTACTATCAAGTGCTCCAACTTGTGCACTGAGATCATCGAGTACAGTGCTCCCGATGAG 38458 Query 94612 ATTGCTGTGTGTAACCTGGGCTCCATCAACCTGTCCACTTTCGTGCGAGATGCCTAC--A 94669 ||||||| || ||||| | ||||||| || |||| ||| | ||| ||| | Sbjct 38457 GTTGCTGTTTGCAACCTTGCCTCCATCGCTCTTCCCACCTTCAT-CGACCCCGTTACCAA 38399 Query 94670 CGTCTACTGCTTCGTTCGATCTGGAGGAGCTTGTGAACTTCGCGGGAAGGATGGTCTTGA 94729 |||||| |||| || | || | ||| ||| || || || | || Sbjct 38398 GGTCTACGACTTCAAGCG-TTTGCACGAGGTTGCCAA------GG---CTATCTGCAAGA 38349 Query 94730 ACCTGAACAGGGTAATCGACAAGAACTTCTACCCCGTCCCGGAGGCGGAGAACTCAAACC 94789 || |||||| | ||||| | |||| |||||| || |||||| || ||| Sbjct 38348 ACTTGAACAAAATCATCGATATCAACTACTACCCTGTTGAGGAGGCTCGTCGTTCTAACA 38289 Query 94790 TGAAGCATCGGCCCATCGGCATCGGCGTCCAGGGTTTCGCGGACGCGCTGGTGATGATGC 94849 || || || ||||| || ||||| ||||||||| |||| || || | |||| ||| Sbjct 38288 TGCGTCACCGCCCCATTGGTATCGGTGTCCAGGGTCTCGCCGATGCCTTCATGATCATGG 38229 Query 94850 GTCTGCCCTACGACTCTGTCGACGCGGCGGGTTTGAATTTGAACATATTCGAAAGCATTT 94909 || ||| || || ||| || | ||||| | | || ||||| | ||| | Sbjct 38228 GTTACGCCTTTGAGTCGCCCGAGGCTCGTCGCTTGAACGTCCAGATCTTCGAGACCATCT 38169 Query 94910 ATTACGGGGCCATGAAACAATCCGTCCACTTGGCCAGATCGGACGGCGGGCCAC--ACGA 94967 | ||| || | | | ||| | | |||||| ||| || | ||| |||| Sbjct 38168 ACCACGCCGCTCTCGAGCGATCGTGCGAGTTGGCC---CAGGA--GCATGGCACCTACGA 38114 Query 94968 ATCGTTCCGCGGATCGCCCTTGGAACAGGGCATTTTTCAGTTCGACCTCTGGGGTGTGAA 95027 | | | ||| || || ||||| | |||| |||| | |||||||| | Sbjct 38113 GACCTACGCCGGTTCCCCTGCCTCCCAGGGTGAACTCCAGTACGACATGTGGGGTGTTAC 38054 Query 95028 GCCCTCGGGTCTGTACGACTGGG--AAGCTCTACGCGCTGATGTTATCAAACACGGTGTG 95085 || || | ||| | ||||||| |||| | || || | ||| |||||| | Sbjct 38053 CCCTTCCGATCTTTGGGACTGGGCTTCGCTCAAGGCCAAGA--TCGCCAAGCACGGTCTT 37996 Query 95086 AAAAACGCGCTGCTTG-TGGCCCCCATGCCCACGGCCTCCACGGCGCAGATCCTTGGCAA 95144 ||| |||| |||| | || |||||||| || || ||||| |||||| | || Sbjct 37995 CGCAACTCGCT-CTTGCTCGCTCCCATGCCTACCGCATCCACAAGTCAGATCTTGGGTTT 37937 Query 95145 CAACGAGTCGTTCGAACCCTTCACCTCCAACGTGTACAACAGGCGGGTGCTCGCCGGGGA 95204 |||||| | ||||| |||| |||||||||| | ||| | || || || || || || Sbjct 37936 CAACGAATGCTTCGAGCCCTACACCTCCAACATCTACTCTCGTCGTGTCCTTGCTGGTGA 37877 Query 95205 ATTCCCCGTCATCAACAAGCACCTCCTACGGGACCTGACGTC--TCTGGGTGTGTGGGGT 95262 ||||| ||| ||||| | || || || || |||| | || ||||| Sbjct 37876 ATTCCAGGTCGTCAACCCTTGGTTGCTCCGCGAACT--CGTCGAGCAAGGATTGTGGAAC 37819 Query 95263 GACAAGGTCAAGAACCAACTGCTACGCGC-CAACGGCTCCGTCCAGAACATCCCGCAAAT 95321 |||| | ||||||| | | ||| | | || ||| |||||||| | || || Sbjct 37818 GACACCATGAAGAACCGTATTAT-CGCTCACGGTGGTTCCATCCAGAACGTTCCTGGTAT 37760 Query 95322 ACCGGAGGACATCAAGGCGCTCTACAAGACCGTGTGGGAGATCCCGCAGCGCGTGATACT 95381 || || |||||| |||||||||||| || ||||||||| | ||| | || | Sbjct 37759 TCCTGACCGTATCAAGAAGCTCTACAAGACTGTTTGGGAGATCTCCCAGAAGGCTATCAT 37700 Query 95382 CGACCACGCGGCCGCCCGCGGGCCCTTCATCTGCCAG 95418 |||| || || | || || | ||||| |||||| Sbjct 37699 CGACATGGCCGCTGATCGAGGTGCTTTCATTTGCCAG 37663 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 494638719829560