Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilago_20xerochloae_20[genbank_20GCA_5F001736075.1_202016-09-20] 13,661 sequences; 24,230,715 total letters Query= NC_011345.1 Length=155122 Score E Sequences producing significant alignments: (Bits) Value seq36 149 6e-31 seq23 129 6e-25 seq53 102 8e-17 seq52 98.7 1e-15 seq67 95.1 1e-14 seq100 86.0 6e-12 >seq36 Length=116313 Score = 149 bits (164), Expect = 6e-31 Identities = 564/872 (65%), Gaps = 21/872 (2%) Strand=Plus/Plus Query 153597 GCAATAGACGCCAGATTACAGACGGCCGTCTCTTCGGCGTCGCTGTACTGCACGATCTCG 153656 || || || || || || || || || ||| |||| | ||||||| | |||||| Sbjct 38429 GCGATGGAGGCAAGGTTGCAAACAGCAACCTCATCGGGAGCACTGTACTCGATGATCTCA 38488 Query 153657 GCGCAGAGGTTGCTGCATTTTATGACGCCCAAATTTTGCTGATTGCTTTTGCGATTGCAC 153716 | ||| | |||| ||| || || || | || | ||| ||| ||||| ||| Sbjct 38489 GTGCACAAGTTGGAGCACTTGATAGTACCGAGGTTCTTCTGGTTGGACTTGCGGTTGGCA 38548 Query 153717 GCGTCTTTGAAGAGCATGTACGGTCCGCCGGTCTCGACTTGCGTTTCGACGATAAACCTA 153776 ||||| ||| |||| ||| | || ||||||||| |||| |||| ||| | || Sbjct 38549 GCGTCCTTGTAGAGGATGAAGGGGTTACCGGTCTCGGTCTGCGACTCGAGGATGG-CGTA 38607 Query 153777 TGC-AGGTCCTGCGCTCGCACCCGCTGCCGAT--AGCGGCCCTCGCTCTCGTATCGCTCG 153833 || | ||| || || | ||| | |||| || ||| |||||| |||||| Sbjct 38608 CCAGAGCTTCTGAGCCTTGAC--GGTGCGCTTTGAGCGACCTTCGGCCTCGTAACGCTCG 38665 Query 153834 TACAGTCGCTCAAACTCGTCGCCGTAGCAGTCGGCGAGGCCGGGACACTGATGCGGACAC 153893 || || ||||| ||||| || |||||||||||||| || ||||| |||| | || ||| Sbjct 38666 TAGAGACGCTCGAACTCTTCACCGTAGCAGTCGGCAAGACCGGGGCACTCGTTGGGGCAC 38725 Query 153894 ATCAGCGACCACATATCG-TCGGCGTTGACGCGTCGCATGAACAGATCCGGCACCCAGAG 153952 || |||||||| | || || || | || | |||||| ||||| || |||||||| Sbjct 38726 ATGAGCGACCAATCACCGTTCTGC-TCAACCCTCTTCATGAAGAGATCGGGAACCCAGAG 38784 Query 153953 CGCGTACATGAGGTCGCGCGCCTTGCAATCCTCCGCGCCCATG----TTGCGTTTCAGAT 154008 ||||| | ||| || || | | | | | || | || || ||||| || | Sbjct 38785 AGCGTAGAAGAGTTCACG-GGCACGAACTTCTTCCTTACCGTGGTTCTTGCG---CAAGT 38840 Query 154009 TGAGCACGCTATAGATGTCGGCGTGCCAGGGTTCAATGTAGACGGCCAGGGCACCTTTAC 154068 ||| | | ||| || | |||||| || |||||||||| ||| | |||||| || Sbjct 38841 CGAGGAACTCAAAGACATCCGAGTGCCAAGGCTCAATGTAGATGGCAAAGGCACCGGGAC 38900 Query 154069 GC---TTTCCGCCCTGATCGACGTGGCGCACCATATTGTTGAAGACGCGCACCATGGGTT 154125 || || || ||||| ||||||| || | | ||||||||||| || | |||||| Sbjct 38901 GCTTGTTACCACCCTGGTCGACGTAACGGGCGGTGTTGTTGAAGACACGAAGCATGGGAA 38960 Query 154126 CCAGGCCGCTTGC-GGTGCCGTTGGTCGAATTGATCTTGCTGCCGCGGGCGCGCACTTGA 154184 | | ||| |||| | |||||||| || | | ||| | || | Sbjct 38961 CGATACCG-TTGCTGACACCGTTGGTGCCGGCAATGTAGGAGCCAGTACCTCGAATGCAG 39019 Query 154185 TGCACGTTAACGCCAATGCCGCCGCCGTACTTTGATATGGCAGCGCAGTCGCCCAGCGTC 154244 || | ||| | |||||||| ||| || ||| || || || ||| || || Sbjct 39020 TGAATGTTCAAACCAATGCCACCGGCGGTCTTGGAGATCATGGCACAGGTCTTGAGGGTG 39079 Query 154245 CTGTAGATGCCGTCGATGCTATCGTCGCGGACGCCGAGCAAGAAACACGAACACATTTGC 154304 ||| ||||||||||| || || | | | | |||||| || | | || Sbjct 39080 TCGTAAATGCCGTCGATCGAGTCATCCTTCATGGTAACAAGGAAACAGGACGAGAGCTGT 39139 Query 154305 GGAATGCGCGTTCCCGCCGAAAAGAGGGTGGGACTCGCGTGCGTAAACAGTTTTTGGCTC 154364 || | | || || || |||||||| || ||||| ||||| ||||| | Sbjct 39140 GGGTGGGGAGTACCAGCGTTGAAGAGGGTTGGCGAGGCGTGAGTAAAGTACTTTTGCGAC 39199 Query 154365 ATCATGCGGTACGTTTCGATGGCGTCTTCGATATCATCGCCGTGAATGCCGAGCGCGACG 154424 || | | |||||| ||||||||| ||||| || | ||||||||| || | || || Sbjct 39200 ATGAGGTTGTACGTCTCGATGGCGCTCTCGATGTCCTGGCCGTGAATACCAACAGCAACA 39259 Query 154425 CGCATGAGCATGTGCTGCGGACGTTCGGCGAC 154456 ||||||||||||||||| ||||| || || || Sbjct 39260 CGCATGAGCATGTGCTGGGGACGCTCAGCAAC 39291 >seq23 Length=140287 Score = 129 bits (142), Expect = 6e-25 Identities = 168/229 (73%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 ||||| |||| ||||||||||| || | | | |||||| ||||| ||||| || | Sbjct 2459 CCGCCACGCAGACGCAAAACTAGGTGCAAGGTGCTCTCCTTCTGAATATTGTAATCAGAC 2400 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | ||| || ||||| | |||||||| | | |||| | |||||| ||||| ||||| Sbjct 2399 AGAGTTCGTCCATCCTCCAACTGTTTACCAGCAAAGATCAAACGCTGCTGGTCGGGAGGA 2340 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTAA--TTGTTCCACGGTGTCGGTCGACTCCA 138565 |||||||| ||||| ||| | || | ||| | |||| | | |||||| | ||||| Sbjct 2339 ATACCTTCCTTGTCC-TGAATCTTGGCTTTGACATTGT-CAATGGTGTCCGAGCTCTCCA 2282 Query 138566 CCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 |||||| || | |||||| ||||| || || || ||||| |||||||| Sbjct 2281 CCTCGAGTGTGATCGTTTTGCCAGTAAGCGTCTTGACAAAGATCTGCAT 2233 Score = 116 bits (128), Expect = 4e-21 Identities = 167/232 (72%), Gaps = 4/232 (2%) Strand=Plus/Minus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || || || | ||| | || || || | | | ||||||||||| ||||||||||| Sbjct 1775 CCACCACGGAGACGGAGGACCAAGTGCAGGGTCGACTCCTTTTGGATGTTGTAGTCCGAA 1716 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | ||| || ||||| || || || |||| | | || |||||||| || || ||||| Sbjct 1715 AGAGTTCGTCCATCCTCAAGCTGCTTTCCGGCAAAAATGAGACGCTGCTGATCGGGAGGG 1656 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTAA--TTGTTCCACGGTGTCGGTCGACTCCA 138565 || || || ||||| ||| | || | || | |||| | | |||||||| ||||| | Sbjct 1655 ATCCCCTCCTTGTCC-TGAATCTTGGCCTTGACGTTGT-CAATGGTGTCGGAAGACTCAA 1598 Query 138566 CCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCATGGC 138617 |||||| || | || ||||| |||||||| ||||| || ||||||||||| Sbjct 1597 CCTCGAGGGTGATGGTCTTACCGGTCAGAGTCTTTACGAAGATCTGCATGGC 1546 Score = 82.4 bits (90), Expect = 8e-11 Identities = 136/193 (70%), Gaps = 4/193 (2%) Strand=Plus/Minus Query 138424 TCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAG 138483 ||||| || ||||||||||| | || || ||| ||||| || || || | | || Sbjct 1967 TCCTTCTGGATGTTGTAGTCCGAGAGGGTTCGGCCGTCTTCGAGCTGCTTTCCAGCAAAG 1908 Query 138484 ATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAA--TT 138541 || |||||||| ||||| || || || ||||| ||||| || | || | |||| || Sbjct 1907 ATAAGACGCTGCTGGTCAGGGGGAATGCCTTCCTTGTC-CTGGATCTTGGCCTTAACGTT 1849 Query 138542 GTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTA 138601 | || | ||||| | ||||| || |||| ||| | || || || |||| || || | Sbjct 1848 G-TCGATAGTGTCCGAGGACTCGACTTCGAGCGTAATGGTCTTGCCGGTCAAGGTCTTGA 1790 Query 138602 CAAAAATCTGCAT 138614 | ||||||||||| Sbjct 1789 CGAAAATCTGCAT 1777 >seq53 Length=94643 Score = 102 bits (112), Expect = 8e-17 Identities = 162/229 (71%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 ||||| || | ||| | || | ||| | | | |||||||| ||||||||||||||| Sbjct 56322 CCGCCACGAAGACGGAGGACAAGATGCAAGGTGGACTCCTTCTGAATGTTGTAGTCGGAA 56381 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | ||||| || || || || || || | | |||| |||||||| ||||| ||||| Sbjct 56382 AGGGTACGGCCATCTTCAAGCTGCTTGCCTGCAAAGATAAGACGCTGCTGGTCAGGAGGA 56441 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTAA--TTGTTCCACGGTGTCGGTCGACTCCA 138565 || || || ||||| ||| | || | || | ||| || | ||||| | ||||| | Sbjct 56442 ATGCCCTCCTTGTC-CTGAATCTTGGCCTTGACGTTG-TCGATAGTGTCCGAGGACTCGA 56499 Query 138566 CCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 | |||| ||| | || || || |||| ||| || ||||| |||||||| Sbjct 56500 CTTCGAGCGTAATGGTCTTGCCGGTCAAAGTCTTGACAAAGATCTGCAT 56548 >seq52 Length=95535 Score = 98.7 bits (108), Expect = 1e-15 Identities = 138/194 (71%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 || ||||| || ||||||||||| | ||||| || ||||| || ||||||| Sbjct 17656 GATTCCTTCTGGATGTTGTAGTCCGAGAGGGTACGACCATCTTCGAGCTGCTTACCGGCG 17715 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAAT 138540 |||| |||||||| || || || || |||||||| ||||| ||| || || | Sbjct 17716 AAGATGAGACGCTGCTGATCAGGGGGAATACCTTCCTTGTCCTGGATCTTGGCCTTGACG 17775 Query 138541 TGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 138600 | || | |||||| | ||||| ||||||| || | || ||||| || || ||||| Sbjct 17776 TTGTCGATGGTGTCCGAAGACTCGACCTCGAGGGTGATGGTCTTACCCGTGAGGGTTTTA 17835 Query 138601 ACAAAAATCTGCAT 138614 ||||| |||||||| Sbjct 17836 ACAAAGATCTGCAT 17849 >seq67 Length=86059 Score = 95.1 bits (104), Expect = 1e-14 Identities = 313/474 (66%), Gaps = 12/474 (3%) Strand=Plus/Minus Query 52086 AACGATGACGAGCGCTATTTTATCAAGCACGTGTTGGCGTTCTTCGCCGCCGCCGATAGC 52145 ||||| ||||||| | |||||| ||||| | || |||||||| || ||||| | Sbjct 5099 AACGACAACGAGCGTCACTTTATCTCCCACGTCCTCGCCTTCTTCGCTGCTTCCGATGGT 5040 Query 52146 ATCGTGAACATTAACCTCATCGAGTACATGCAG--CGGAACGTTCCGGAACTCGAGGCGC 52203 ||||| ||| |||||| ||||| | ||| | ||| |||| || |||||| | Sbjct 5039 ATCGTCAACGAGAACCTCGTCGAGCGTTT-CAGTTCCGAA-GTTCAGGCTGCCGAGGCTC 4982 Query 52204 AATACTTTTATAATTTGCAAGTGCTCATCGAGTGCGTGCACACGGAGATGTACAATCTGC 52263 || ||| ||| ||| || | | || ||| | | ||| | |||| ||| || | Sbjct 4981 GATGCTTCTATGGTTTCCAGATCATGATGGAGAACATTCACTCCGAGACTTACTCGCTCC 4922 Query 52264 TCATTGAGCAGCTGATAAAAGATGAGCACGAGC-GCGACACG--CTGCTGAATGCGTTCG 52320 |||| || || || | | | ||||| |||| |||| | || | | || ||| Sbjct 4921 TCATCGA-CACCT-ACATTCG-TGAGCCTGAGCAGCGAGAATTCCTCTTTGACGCCGTCG 4865 Query 52321 AGCACGTGCCGTGCGTTCGCAAAAAGGCTCAGTGGGCAATGAAGTGGATC-GAGAGCGAC 52379 || | | || ||| | ||||| | ||||| | |||||| | || || | Sbjct 4864 AGACCATCCCCGTCGTCAAGCAGAAGGCCGACTGGGCTCTTCGTTGGATCAGCGACCG-C 4806 Query 52380 ACCGCCACGCTGGCCGAGCGCATGGTGGCCTTCGCCATAGTCGAGGGCGTGtttttttCC 52439 | ||||| | ||||| || | || ||||| ||| ||| ||||| | || || ||| Sbjct 4805 AAAGCCACCTTCGCCGAACGTCTCGTTGCCTTTGCCGCAGTTGAGGGTATCTTCTTCTCC 4746 Query 52440 GGCAGCTTTGCCGCCATCTTTTACATTAAAACGAAAGGCATAATGCCCGGCCTGACGTTC 52499 ||| ||| ||| ||||||| | | || | | || | |||||||| || || ||| Sbjct 4745 GGCTCCTTCGCCTCCATCTTCTGGCTCAAGAAGCGTGGTCTTATGCCCGGACTCACCTTC 4686 Query 52500 AGCAACGAGTTGATATCGCGCGACGAAGGACTGCACACGGACTTTGCGTGCCTC 52553 ||||||| | || || ||||||||||| || ||||| ||||| || |||||| Sbjct 4685 TCCAACGAGCTCATCTCACGCGACGAAGGTCTTCACACCGACTTCGCCTGCCTC 4632 >seq100 Length=67640 Score = 86.0 bits (94), Expect = 6e-12 Identities = 119/167 (71%), Gaps = 0/167 (0%) Strand=Plus/Minus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 |||||||| || ||||||||||| | || || ||||||||| || ||||||| Sbjct 61172 GACTCCTTCTGGATGTTGTAGTCCGAGAGGGTGCGGCCGTCCTCGAGCTGCTTACCGGCG 61113 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAAT 138540 |||| |||||||| ||||| || || ||||| || ||||| ||| || || | Sbjct 61112 AAGATGAGACGCTGCTGGTCGGGGGGGATACCCTCCTTGTCCTGGATCTTGGCCTTGACG 61053 Query 138541 TGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACC 138587 | || | |||||||| ||||||||||| | || | || ||||| Sbjct 61052 TTGTCGATGGTGTCGGAAGACTCCACCTCAAGGGTGATGGTCTTACC 61006 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496177656991920