Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilago_20xerochloae_20[genbank_20GCA_5F001736075.1_202016-09-20] 13,661 sequences; 24,230,715 total letters Query= NC_012639.1 Length=141291 Score E Sequences producing significant alignments: (Bits) Value seq53 93.3 4e-14 seq52 89.7 5e-13 seq23 84.2 2e-11 >seq53 Length=94643 Score = 93.3 bits (102), Expect = 4e-14 Identities = 148/210 (70%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 45132 ACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTCC 45191 || ||||||| || || ||||| || || || || ||| | ||| ||| || Sbjct 56340 ACAAGATGCAAGGTGGACTCCTTCTGAATGTTGTAGTCGGAAAGGGTACGGCCATCTTCA 56399 Query 45192 AATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGA 45251 | || || ||||| | || | || |||||||| || |||||||| || || || ||| Sbjct 56400 AGCTGCTTGCCTGCAAAGATAAGACGCTGCTGGTCAGGAGGAATGCCCTCCTTGTCCTGA 56459 Query 45252 ATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTT 45310 || || |||| || | || | ||||| || |||||||||||||| |||| || || Sbjct 56460 ATCTTGGCCTTGA-CGTTGTCGATAGTGTCCGAGGACTCGACTTCGAGCGTAATGGTCTT 56518 Query 45311 GCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 |||||| | ||| || ||||| || ||||| Sbjct 56519 GCCGGTCAAAGTCTTGACAAAGATCTGCAT 56548 >seq52 Length=95535 Score = 89.7 bits (98), Expect = 5e-13 Identities = 148/211 (70%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 45132 ACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTCC 45191 || || || || || |||||||| ||||| || || || || ||| | ||| || Sbjct 17641 ACGAGGTGAAGGGTGGATTCCTTCTGGATGTTGTAGTCCGAGAGGGTACGACCATCTTCG 17700 Query 45192 AATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGA 45251 | || || || ||| | || | || ||||| || || ||||| ||||| || || || Sbjct 17701 AGCTGCTTACCGGCGAAGATGAGACGCTGCTGATCAGGGGGAATACCTTCCTTGTCCTGG 17760 Query 45252 ATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTT 45310 || || |||| || | || | |||||| ||||||||||| ||||| || | || || Sbjct 17761 ATCTTGGCCTTGA-CGTTGTCGATGGTGTCCGAAGACTCGACCTCGAGGGTGATGGTCTT 17819 Query 45311 GCCGGTTAGAGTTTTTACAAAAATTTGCATC 45341 || || || ||||| ||||| || |||||| Sbjct 17820 ACCCGTGAGGGTTTTAACAAAGATCTGCATC 17850 >seq23 Length=140287 Score = 84.2 bits (92), Expect = 2e-11 Identities = 146/210 (70%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 45132 ACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTCC 45191 || ||||||| || |||||| ||||| || || || || |||| || || Sbjct 1985 ACGAGATGCAAGGTGCTTTCCTTCTGGATGTTGTAGTCCGAGAGGGTTCGGCCGTCTTCG 1926 Query 45192 AATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGA 45251 | || ||||| || | || | || |||||||| || ||||||||||| || || || Sbjct 1925 AGCTGCTTTCCAGCAAAGATAAGACGCTGCTGGTCAGGGGGAATGCCTTCCTTGTCCTGG 1866 Query 45252 ATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTT 45310 || || || | || | || | ||||| || |||||||||||||| |||| || || Sbjct 1865 ATCTTGGCCTTAA-CGTTGTCGATAGTGTCCGAGGACTCGACTTCGAGCGTAATGGTCTT 1807 Query 45311 GCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 |||||| | || || || ||||| ||||| Sbjct 1806 GCCGGTCAAGGTCTTGACGAAAATCTGCAT 1777 Score = 82.4 bits (90), Expect = 7e-11 Identities = 144/207 (70%), Gaps = 2/207 (1%) Strand=Plus/Minus Query 45138 TGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTCCAATTGT 45197 ||||| || || ||||||||||| || || || | ||| ||| || | || Sbjct 1751 TGCAGGGTCGACTCCTTTTGGATGTTGTAGTCCGAAAGAGTTCGTCCATCCTCAAGCTGC 1692 Query 45198 TTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTTT 45257 ||||| || | || | || ||||| || || || || || || || || ||||| || Sbjct 1691 TTTCCGGCAAAAATGAGACGCTGCTGATCGGGAGGGATCCCCTCCTTGTCCTGAATCTTG 1632 Query 45258 TGTTTGATCGCT-TCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGGT 45316 |||| || | || | ||||||||||||||| || ||||| || | || || ||||| Sbjct 1631 GCCTTGA-CGTTGTCAATGGTGTCGGAAGACTCAACCTCGAGGGTGATGGTCTTACCGGT 1573 Query 45317 TAGAGTTTTTACAAAAATTTGCATCGC 45343 ||||| ||||| || || ||||| || Sbjct 1572 CAGAGTCTTTACGAAGATCTGCATGGC 1546 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 451926014803560