Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilago_20xerochloae_20[genbank_20GCA_5F001736075.1_202016-09-20] 13,661 sequences; 24,230,715 total letters Query= NC_013288.1 Length=191761 Score E Sequences producing significant alignments: (Bits) Value seq36 221 1e-52 seq113 149 8e-31 seq67 102 1e-16 >seq36 Length=116313 Score = 221 bits (244), Expect = 1e-52 Identities = 902/1395 (65%), Gaps = 35/1395 (3%) Strand=Plus/Plus Query 115903 TAGATGTTGGTCGTGTATGGCTCAAAGCACTCATTGTTACCCAAGATTTGGGCTGTGGAG 115962 |||||||||| ||||| ||||| ||||| || ||| ||||||||| || |||||| Sbjct 37901 TAGATGTTGGAGGTGTAGGGCTCGAAGCATTCGTTGAAACCCAAGATCTGACTTGTGGAT 37960 Query 115963 GCTGTGGGCATGGGTGCCATGAGAAGGCTGTTGCGGAGACCCACCCCCCTAATGCGTTCC 116022 || || |||||||| || | | || |||||| ||||| | || || Sbjct 37961 GCGGTAGGCATGGGAGCGAGCAAGAGCGAGTTGCGAAGACCGTGCTTGGCGATCTTGGCC 38020 Query 116023 TTGAGGGCGTCCCAGTCGTAGTTGAGCTTT--GTCTCCCCCTCCCACATATCAAACTGGA 116080 ||||| | ||||||| | || | | | | | ||||||| || |||||| Sbjct 38021 TTGAGCGAAGCCCAGTCCCAAA-GATCGGAAGGGGTAACAC-CCCACATGTCGTACTGGA 38078 Query 116081 GGATACCTTGGGACGCTGGCGATCCCTCAAATGTCTCATATGGGCCCTCAACCTCCGCCA 116140 | ||| ||||| || || || || | | ||||| || | ||| | ||| |||| Sbjct 38079 GTTCACCCTGGGAGGCAGGGGAACCGGCGTAGGTCTCGTAGGTGCCATGCTCCTGGGCCA 38138 Query 116141 ATTCGGA-GCTCGCCTCGAGGGCTGCGTGATACATTGTCTCAAAAATGCGAGCATTCATT 116199 | ||| | | |||| ||||| || ||||| || || ||||| || || | | |||| Sbjct 38139 ACTCGCACGATCGC-TCGAGAGCGGCGTGGTAGATGGTCTCGAAGATCTGGACGTTCAA- 38196 Query 116200 GCCTTG-GCCTCGTCGGAATCAAACGCGAGACGGCACAAAATAAATACATCCGCGAGACC 116258 || | |||||| || ||||| ||| || | || || |||| |||||||| Sbjct 38197 GCGACGAGCCTCGGGCGACTCAAAGGCGTAACCCATGATCATGAAGGCATCGGCGAGACC 38256 Query 116259 TTGGACACCGAGGCCAATTGGGCGATGTCTCATATTAGACTTTCGAGCGGTCTCCACGGG 116318 |||||||||| ||||| ||||| || | ||| ||||| ||||| ||| || || Sbjct 38257 CTGGACACCGATACCAATGGGGCGGTGACGCATGTTAGAACGACGAGCCTCCTCAACAGG 38316 Query 116319 ATAAAAATTCCTATCGATAACCCTATTTAGATTTTTGGTGACAACCTTTGTGATTTCATG 116378 || | || ||||||| | | || | || ||| || | |||| | | || || Sbjct 38317 GTAGTAGTTGATATCGATGATTTTGTTCAAGTTCTTGCAGATAGCCTTGGCAACCTCGTG 38376 Query 116379 -AAGCTTTTCGTAATCAAA-ACTGCGAGTCTCTTCATTGACATACTTAGGAAGGGCGATT 116436 || | || | | || | || | || | | || | | ||||| ||||| Sbjct 38377 CAAACGCTT-GAAGTCGTAGACCTTG-GTAACGGGGTCGATGAAGGTGGGAAGAGCGATG 38434 Query 116437 GACGCCAGATTACACACAGAGGTCTCATCCTTATCAGTGTACTCTATAATTTCCGTACAC 116496 || || || || || |||| |||||| | || ||||||| || || || || ||| Sbjct 38435 GAGGCAAGGTTGCAAACAGCAACCTCATCGGGAGCACTGTACTCGATGATCTCAGTGCAC 38494 Query 116497 AAATTTGAACTCTTAATGGTGCCCAAGTTCTTTTGATTTGACTTTGTGTTACACGCATCC 116556 || || || | ||| || || || | |||||| || || ||||| ||| || ||| Sbjct 38495 AAGTTGGAGCACTTGATAGTACCGAGGTTCTTCTGGTTGGACTTGCGGTTGGCAGCGTCC 38554 Query 116557 TTGTAGAGCATATATGGCGTCCCCGTCTCCGTTTGGGACTTGAGAATAGCCTTCCATA-C 116615 |||||||| || | || | || ||||| || || |||| ||| || || | ||| | | Sbjct 38555 TTGTAGAGGATGAAGGGGTTACCGGTCTCGGTCTGCGACTCGAGGATGGCGTACCAGAGC 38614 Query 116616 ATCGGCGGCTGGCACAGTGGCGTTGGCTCGCCCCTCCTCCTCGTACTTTGTGTAGAGGGC 116675 || | | || | || ||| || | || || || ||||||| |||||| Sbjct 38615 TTCTGAGCCTTG-ACGGTGCGCTTTGAGCGACCTTCGGCCTCGTAACGCTCGTAGAGACG 38673 Query 116676 CTCAAACTCTTCACCCACAGC-CTCTGAGAGCCCTGGTGCCTTATCTGGACAGAAGAGAG 116734 ||| ||||||||| || ||| || | || || || || | || || | ||| | Sbjct 38674 CTCGAACTCTTCA-CCGTAGCAGTCGGCAAGACCGGGGCACTCGTTGGGGCACATGAGCG 38732 Query 116735 ACCATTGACCACCCTCCTCAACCCGCTTCATGAAGAGGTCTGGGATCCAGAGCGCCGAGA 116794 |||| | ||| || |||||||| |||||||||||| || || | |||||| || ||| Sbjct 38733 ACCAATCACCGTTCTGCTCAACCCTCTTCATGAAGAGATCGGGAACCCAGAGAGCGTAGA 38792 Query 116795 AGAGATCCCGACAGCGAGCTTCTTCATCCCCCTGATTGAGACGCAACTCCAAAAAGTCCA 116854 |||| || || ||| ||||||| | || || || ||||| || | || || | Sbjct 38793 AGAGTTCACGGGCACGAACTTCTTCCTTACCGTGGTTCTTGCGCAAGTCGAGGAACTCAA 38852 Query 116855 TGATATCCGCGTGCCACGGTTCCAGGTACACCGCGATTGACCCCTTGCGACG------AC 116908 || ||||| |||||| || || | ||| | || | | || | |||| || Sbjct 38853 AGACATCCGAGTGCCAAGGCTCAATGTAGATGGCAAAGGCACC---GGGACGCTTGTTAC 38909 Query 116909 CAGCCTGGTTTACATACCTCGCCGTTGCGTTAAATACGCGAAGCATTGGAATGATACCAT 116968 || |||||| || || | || || ||| || || |||||||| |||| |||||| | Sbjct 38910 CACCCTGGTCGACGTAACGGGCGGTGTTGTTGAAGACACGAAGCATGGGAACGATACCGT 38969 Query 116969 --CAGATTGGCCATTTGTCCCCCGAA--TACGAGACTTGTTGGCTCTGACATCGTGGATG 117024 | || || || || || || || ||| | | ||| | ||| ||| Sbjct 38970 TGCTGA--CACCGTTGGTGCCGGCAATGTAGGAGCC--AGTACCTCGAATGCAGTGAATG 39025 Query 117025 TGCATACCAATACCCCCTGCCCACTTTGAGATTTGTGCGCACTCCGTGAGACTGCCGTAG 117084 | || |||||| || || || ||| ||||| || || | |||| || |||| Sbjct 39026 TTCAAACCAATGCCACCGGCGGTCTTGGAGATCATGGCACAGGTCTTGAGGGTGTCGTAA 39085 Query 117085 ATCCCATCGATCGAGTCACCCTTATTTGCGATGAGGAAGCAGCTCGACATTTGTGGCCTT 117144 || || |||||||||||| |||| | | | ||||| ||| ||| | ||||| Sbjct 39086 ATGCCGTCGATCGAGTCATCCTTCATGGTAACAAGGAAACAGGACGAGAGCTGTGGGTGG 39145 Query 117145 GGTGTACCAGCGTTGAAGAGGGTTGGTGTCGCGTGGATGAACATAC-CTTGGGACATCTT 117203 || ||||||||||||||||||||||| | |||| || || ||| ||| ||||| Sbjct 39146 GGAGTACCAGCGTTGAAGAGGGTTGGCGAGGCGT-GAGTAAAGTACTTTTGCGACATGAG 39204 Query 117204 ATCGTAGGTCTCCAAGACAGAGGGAATGTCTTCCCCGTGAATACCGATTGAGACCCGCAT 117263 | ||| ||||| | | | ||||| | ||||||||||| | | || ||||| Sbjct 39205 GTTGTACGTCTCGATGGCGCTCTCGATGTCCTGGCCGTGAATACCAACAGCAACACGCAT 39264 Query 117264 AAACATGTATTGGGG 117278 | ||||| ||||| Sbjct 39265 GAGCATGTGCTGGGG 39279 >seq113 Length=59678 Score = 149 bits (164), Expect = 8e-31 Identities = 269/385 (70%), Gaps = 14/385 (4%) Strand=Plus/Plus Query 176596 CTTGAGGAGGGATGGCCAGAAGTAGTGGATCATATTGAGGATGAGACCCTTAATGTGTGA 176655 |||||| || ||||| |||||| || || | |||| |||||||||||| || ||||| Sbjct 56786 CTTGAGCAGCGATGGGTAGAAGTGGTCGAGGAAGTTGATGATGAGACCCTTGATATGTGA 56845 Query 176656 ACCATCGTTATCCGCATCCGTCATAATCATGAGCCGACCATAGCG-AAGCTCGGAAACAT 176714 |||||||| |||| ||| ||||| ||||||| | || || || ||||| ||| | Sbjct 56846 ACCATCGTGATCCTGATCGGTCATGATCATGATACTGCCGTATCGCAAGCT-ACTAACGT 56904 Query 176715 CTTGATAATCCTTACCTTGTTGAAGACCCAAAATCTTCTTGAGATCATTGAACTCTTGGT 176774 | |||| | ||| || ||||||||||| | ||| | |||| | |||| ||| || Sbjct 56905 CAAGATATTGCTTGCCGTGTTGAAGACCGAGAATTTCTTTGATGGCTTTGATTTCTGCGT 56964 Query 176775 T-----TGATGTGAGTTGCGCCACTGAAGCGTCGCGGACATTTTTACACTTCCCGCGGAG 176829 | |||| || || || | || || || || || || | ||| || ||||| Sbjct 56965 TCTTCATGATCTG-GT--CGTGAGTG--GCCTCACGAACGTTGAGAAGCTTACCACGGAG 57019 Query 176830 AGGGAACACACCGTAGTGATCACGACCAACCACAGAGAGACCAGCAACTGCGAGGGTCTT 176889 || || |||||||||| |||||||| || || || || ||||| ||||| | ||| Sbjct 57020 CGGAAAGACACCGTAGTTGTCACGACCCACTTCAACAAGGCCGGCAACAGCGAGAGCCTT 57079 Query 176890 CGCGGAATCACCCTCCGTCACGATGAGCGTACACTTTCCAGATTGTGCCGTC-CCCGCCT 176948 ||||| ||||| || || | ||||| ||||| | || || | | | | || || | Sbjct 57080 GGCGGAGTCACCTTCGGTGAGAATGAGTGTACAGTCCTTAGCTT-TCCTGCCACCTGCAT 57138 Query 176949 TGTTCGCATCGTCCAACTTGGGAAT 176973 |||| ||||| || | |||||| || Sbjct 57139 TGTTGGCATCTTCGAGCTTGGGGAT 57163 >seq67 Length=86059 Score = 102 bits (112), Expect = 1e-16 Identities = 112/149 (75%), Gaps = 0/149 (0%) Strand=Plus/Plus Query 127531 GTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAGACC 127590 ||| ||||| ||||| || |||||||| || || |||||| || || ||||| ||||| Sbjct 4650 GTGAAGACCTTCGTCGCGTGAGATGAGCTCGTTGGAGAAGGTGAGTCCGGGCATAAGACC 4709 Query 127591 CCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCACACA 127650 |||||||| | |||||| || | || ||||| ||||||||||| ||||| || Sbjct 4710 ACGCTTCTTGAGCCAGAAGATGGAGGCGAAGGAGCCGGAGAAGAAGATACCCTCAACTGC 4769 Query 127651 CGCGAACGCAAATAGACGCTCGGCAAAGG 127679 || || |||| ||||| ||||| |||| Sbjct 4770 GGCAAAGGCAACGAGACGTTCGGCGAAGG 4798 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 613402435976760