Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilago_20xerochloae_20[genbank_20GCA_5F001736075.1_202016-09-20] 13,661 sequences; 24,230,715 total letters Query= NC_013668.3 Length=248526 Score E Sequences producing significant alignments: (Bits) Value seq67 116 6e-21 >seq67 Length=86059 Score = 116 bits (128), Expect = 6e-21 Identities = 180/254 (71%), Gaps = 6/254 (2%) Strand=Plus/Plus Query 159914 AACAGGAGGCACGCAAAGTCGCAGTGCAGTCCCTCGTCCCGAGAGATGAACTCGTTGGAC 159973 || |||||||| || |||||| ||| || || ||||| || ||||||| ||||||||| Sbjct 4627 AAGAGGAGGCAGGCGAAGTCGGTGTGAAGACCTTCGTCGCGTGAGATGAGCTCGTTGGAG 4686 Query 159974 ATGATGAGGCCCGGCATGATCCCACGCGGTTTGAGCCAAAAAATGGCCGCAAAAGCACCG 160033 | | |||| || ||||| | |||||| |||||||| || |||| || || | ||| Sbjct 4687 AAGGTGAGTCCGGGCATAAGACCACGCTTCTTGAGCCAGAAGATGGAGGCGAAGGAGCCG 4746 Query 160034 CTAAAAAAGATCCCCTCCACGGCCGCAAACGCCACGAGCCTCTCACCAAAAGAGGCGTTG 160093 || ||||| ||||| || || ||||| || ||||| | || | || | ||| ||| Sbjct 4747 GAGAAGAAGATACCCTCAACTGCGGCAAAGGCAACGAGACGTTCGGCGAAGGTGGCTTTG 4806 Query 160094 GTGTCATGGGTCCACCTTTTGGCCCATTCAGCCTTCT--TTG-CGATGCACGGCATGCGC 160150 ||| | |||| | ||||| || ||||||| ||| ||| | || ||| | Sbjct 4807 CGGTCGCTGATCCAACGAAGAGCCCAGTCGGCCTTCTGCTTGACGACG---GGGATGGTC 4863 Query 160151 TCGACGGCGTTAAA 160164 |||||||||| ||| Sbjct 4864 TCGACGGCGTCAAA 4877 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 795019417310160