Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilago_20xerochloae_20[genbank_20GCA_5F001736075.1_202016-09-20] 13,661 sequences; 24,230,715 total letters Query= NC_013756.1 Length=368454 Score E Sequences producing significant alignments: (Bits) Value seq52 150 4e-31 seq23 138 3e-27 seq53 125 2e-23 seq100 118 2e-21 seq1578 114 3e-20 seq687 107 5e-18 >seq52 Length=95535 Score = 150 bits (166), Expect = 4e-31 Identities = 164/218 (75%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 ||||| | ||||| ||||| || || || ||||| |||| ||||||||| | | || Sbjct 17629 CGAAGGCGGAGGACGAGGTGAAGGGTGGATTCCTTCTGGATGTTGTAGTCCGAGAGGGTA 17688 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 | |||||||| |||||||| ||||||||||||||||||||||| || || ||| ||| Sbjct 17689 CGACCATCTTCGAGCTGCTTACCGGCGAAGATGAGACGCTGCTGATCAGGGGGAATACCT 17748 Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAAC 199588 || ||||| ||||| ||| ||| |||| |||||| | | || || || | Sbjct 17749 TCCTTGTCCTGGATCTTGGCCTTGACGTTGTCGATGGTGTCCGAAGACTCGACCTCGAGG 17808 Query 199589 GTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||||| |||||||||||||| ||||| ||||| || || Sbjct 17809 GTGATGGTCTTACCCGTGAGGGTTTTAACAAAGATCTG 17846 >seq23 Length=140287 Score = 138 bits (152), Expect = 3e-27 Identities = 156/209 (75%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 ||||| | ||| || |||||||||||||||| ||||||||| | | ||| | |||||| Sbjct 1760 AGGACCAAGTGCAGGGTCGACTCCTTTTGGATGTTGTAGTCCGAAAGAGTTCGTCCATCC 1701 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 || |||||||||||||| || |||||||||||||| || ||| || || || ||| Sbjct 1700 TCAAGCTGCTTTCCGGCAAAAATGAGACGCTGCTGATCGGGAGGGATCCCCTCCTTGTCC 1641 Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597 |||||||| ||| ||| || | |||||| | | || || || | ||||| ||| Sbjct 1640 TGAATCTTGGCCTTGACGTTGTCAATGGTGTCGGAAGACTCAACCTCGAGGGTGATGGTC 1581 Query 199598 TTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||||| || ||||| || || || || || Sbjct 1580 TTACCGGTCAGAGTCTTTACGAAGATCTG 1552 Score = 96.9 bits (106), Expect = 8e-15 Identities = 134/188 (71%), Gaps = 0/188 (0%) Strand=Plus/Minus Query 199439 TCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCTTCCAGCTGCTTTCCGGCGAAG 199498 ||||| |||| ||||||||| | | || | || ||||| ||||||||||| || ||| Sbjct 1967 TCCTTCTGGATGTTGTAGTCCGAGAGGGTTCGGCCGTCTTCGAGCTGCTTTCCAGCAAAG 1908 Query 199499 ATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCCTGAATCTTTTGCTTCACGGAT 199558 || |||||||||||||| || ||| ||||| ||||| ||||| ||| ||| Sbjct 1907 ATAAGACGCTGCTGGTCAGGGGGAATGCCTTCCTTGTCCTGGATCTTGGCCTTAACGTTG 1848 Query 199559 TCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTCTTACCCGTGAGAGTTTTCACA 199618 |||| ||||| | | || || || | ||| || ||||| || || | || || || Sbjct 1847 TCGATAGTGTCCGAGGACTCGACTTCGAGCGTAATGGTCTTGCCGGTCAAGGTCTTGACG 1788 Query 199619 AAAATTTG 199626 ||||| || Sbjct 1787 AAAATCTG 1780 Score = 93.3 bits (102), Expect = 1e-13 Identities = 134/189 (71%), Gaps = 0/189 (0%) Strand=Plus/Minus Query 199438 CTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCTTCCAGCTGCTTTCCGGCGAA 199497 |||||| || | ||||| |||| || ||| | |||||| |||| ||| || || || || Sbjct 2424 CTCCTTCTGAATATTGTAATCAGACAGAGTTCGTCCATCCTCCAACTGTTTACCAGCAAA 2365 Query 199498 GATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCCTGAATCTTTTGCTTCACGGA 199557 ||| | |||||||||||| ||| ||| ||||| ||||||||||| || || Sbjct 2364 GATCAAACGCTGCTGGTCGGGAGGAATACCTTCCTTGTCCTGAATCTTGGCTTTGACATT 2305 Query 199558 TTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTCTTACCCGTGAGAGTTTTCAC 199617 || | |||||| | | || || || | |||||||| || || || || || || || Sbjct 2304 GTCAATGGTGTCCGAGCTCTCCACCTCGAGTGTGATCGTTTTGCCAGTAAGCGTCTTGAC 2245 Query 199618 AAAAATTTG 199626 ||| || || Sbjct 2244 AAAGATCTG 2236 >seq53 Length=94643 Score = 125 bits (138), Expect = 2e-23 Identities = 153/209 (73%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 || || |||||||| || |||||||| |||| ||||||||| | | || | |||||| Sbjct 56565 AGAACGAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCCGAGAGGGTGCGGCCATCT 56624 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 || |||||||| || ||||||||||| |||||||| || || || ||||| ||| Sbjct 56625 TCGAGCTGCTTACCAGCGAAGATGAGTCGCTGCTGATCGGGTGGGATGCCTTCCTTGTCC 56684 Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597 |||||||| ||| || |||| |||||| | | || || || | ||||| ||| Sbjct 56685 TGAATCTTGGCCTTGACATTGTCGATGGTGTCCGAGGACTCAACCTCGAGGGTGATGGTC 56744 Query 199598 TTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || || ||||| || || ||||| || || Sbjct 56745 TTGCCGGTGAGGGTCTTGACAAAGATCTG 56773 Score = 118 bits (130), Expect = 2e-21 Identities = 157/218 (72%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 ||||| | |||||||| || | || |||||||| || | ||||||||| | | || Sbjct 56328 CGAAGACGGAGGACAAGATGCAAGGTGGACTCCTTCTGAATGTTGTAGTCGGAAAGGGTA 56387 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 | |||||||| |||||||| || || ||||| |||||||||||||| ||| ||| || Sbjct 56388 CGGCCATCTTCAAGCTGCTTGCCTGCAAAGATAAGACGCTGCTGGTCAGGAGGAATGCCC 56447 Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAAC 199588 || ||||||||||| ||| ||| |||| ||||| | | || || || | | Sbjct 56448 TCCTTGTCCTGAATCTTGGCCTTGACGTTGTCGATAGTGTCCGAGGACTCGACTTCGAGC 56507 Query 199589 GTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || || ||||| || || | ||| || ||||| || || Sbjct 56508 GTAATGGTCTTGCCGGTCAAAGTCTTGACAAAGATCTG 56545 >seq100 Length=67640 Score = 118 bits (130), Expect = 2e-21 Identities = 137/185 (74%), Gaps = 0/185 (0%) Strand=Plus/Minus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 ||||| |||||||| || |||||||| |||| ||||||||| | | || | || || Sbjct 61190 AGGACGAGGTGGAGGGTAGACTCCTTCTGGATGTTGTAGTCCGAGAGGGTGCGGCCGTCC 61131 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 || |||||||| |||||||||||||||||||||||||| || || || || ||| Sbjct 61130 TCGAGCTGCTTACCGGCGAAGATGAGACGCTGCTGGTCGGGGGGGATACCCTCCTTGTCC 61071 Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597 || ||||| ||| ||| |||| |||||| | | || || || | ||||| ||| Sbjct 61070 TGGATCTTGGCCTTGACGTTGTCGATGGTGTCGGAAGACTCCACCTCAAGGGTGATGGTC 61011 Query 199598 TTACC 199602 ||||| Sbjct 61010 TTACC 61006 >seq1578 Length=462 Score = 114 bits (126), Expect = 3e-20 Identities = 131/170 (77%), Gaps = 16/170 (9%) Strand=Plus/Plus Query 43091 CCTTTTAGTCTCTGAACCTTTT-CTTCTTTCGAAGAA-CTTGGCTGCGGATTGTCCAATC 43148 || ||||||||||||||||| |||||| |||||| |||||||||||||||||||||| Sbjct 193 CCATTTAGTCTCTGAACCTTCCACTTCTTGCGAAGAGGCTTGGCTGCGGATTGTCCAATC 252 Query 43149 CTCAACATTTTTACCATACCC-ACGCCATTACGCT--TGGTGCA-----ACTCTTTCGA- 43199 | | |||||||||||||| | ||||||| || || |||| | ||| ||| Sbjct 253 TCTAGCGTTTTTACCATACCCGAGGCCATTAACCTGGTGCTGCACCCCTAATCTCACGAT 312 Query 43200 ---GAAGCGGTAGTTGAGGCTCTAAGGAGTTTCCCGCAATTTGAGGATGT 43246 | ||||||| | |||||||||||||||||||||||| |||||| Sbjct 313 GGGGCCGCGGTAGCTAGAGCTCTAAGGAGTTTCCCGCAATTT--GGATGT 360 >seq687 Length=1199 Score = 107 bits (118), Expect = 5e-18 Identities = 135/179 (75%), Gaps = 16/179 (9%) Strand=Plus/Plus Query 43091 CCTTTTAGTCTCTGAACCTTT---TCTTCTTTCGAAGAA---CTTGGCTGCGGATTGTCC 43144 || ||||||||||||||||| |||| || | |||| |||||||||||||||||| Sbjct 931 CCATTTAGTCTCTGAACCTTCCACTCTTTTTGCAAAGAGAGGCTTGGCTGCGGATTGTCC 990 Query 43145 AATCCTCAACATTTTTACCATACCC-ACGCCATTACGCT--TGGTGCAACTC-TTTCG-- 43198 |||| | | || ||||||||||| | ||||||| || || |||| | | ||||| Sbjct 991 AATCTCTAGCGTTATTACCATACCCGAGGCCATTAACCTGGTGCTGCATCCCATTTCGCA 1050 Query 43199 ---AGAA-GCGGTAGTTGAGGCTCTAAGGAGTTTCCCGCAATTTGAGGATGTTGCCTCT 43253 ||| ||||||| | ||||||||||||||||||||||||| ||| |||||| Sbjct 1051 ATGAGACCGCGGTAGCTAGAGCTCTAAGGAGTTTCCCGCAATTTGGATGTGTCGCCTCT 1109 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1178715251510287