Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilago_20xerochloae_20[genbank_20GCA_5F001736075.1_202016-09-20] 13,661 sequences; 24,230,715 total letters Query= NC_013953.1 Length=156344 Score E Sequences producing significant alignments: (Bits) Value seq67 300 2e-76 seq52 123 2e-23 seq23 123 2e-23 seq100 105 7e-18 seq53 105 7e-18 >seq67 Length=86059 Score = 300 bits (332), Expect = 2e-76 Identities = 402/552 (73%), Gaps = 9/552 (2%) Strand=Plus/Plus Query 132894 GCAAGCAAAGTCGCAATGCAAGCCCTCGTCCCTGGAAATGAGTTCGTTGCTGAAAGTCAA 132953 ||| || |||||| || | || ||||| | || ||||| |||||| ||| || | Sbjct 4635 GCAGGCGAAGTCGGTGTGAAGACCTTCGTCGCGTGAGATGAGCTCGTTGGAGAAGGTGAG 4694 Query 132954 GCCGGGCATGAGGCCGCGTTTTTTGAGCCAAAATATGGCGGCGAAACTGCCCGAAAAGAA 133013 |||||||| || || || || |||||||| || |||| |||||| ||| || ||||| Sbjct 4695 TCCGGGCATAAGACCACGCTTCTTGAGCCAGAAGATGGAGGCGAAGGAGCCGGAGAAGAA 4754 Query 133014 GACGCCCTCGACGGCCGCGAAAGCCACCAGGCGCTCGCCGAACGTGGCTTCTTTGCTGGC 133073 || ||||| || || || || || || || || ||| |||| ||||||| | | | || Sbjct 4755 GATACCCTCAACTGCGGCAAAGGCAACGAGACGTTCGGCGAAGGTGGCTT-TGCGGTCGC 4813 Query 133074 -GATCCAGCGCAGCGCCCATTCGGCCTTTTCTTTGACGCACGGCATCGTTTCGATGGCGT 133132 |||||| || || ||||| |||||||| | |||||| || || || |||| ||||| Sbjct 4814 TGATCCAACGAAGAGCCCAGTCGGCCTTCTGCTTGACGACGGGGATGGTCTCGACGGCGT 4873 Query 133133 TCAACAAACGGAGTTTCTCTTCCGAGGA--ACGCACGTAGGTGTCGATGAGGGTCGAATA 133190 ||| | | | | | || || | ||| ||| | |||||||||||||||| ||| || Sbjct 4874 -CAA-AGAGGAATTCTCGCTGCTCAGGCTCACGAATGTAGGTGTCGATGAGGAGCGAGTA 4931 Query 133191 CATTTCCGAGTGTACGTTCTCCATGGCGATTTGAAAGCCGTAAAAGCACCGCGCCTCGAC 133250 | || ||||| | ||||||||| ||| || || || || ||||| || |||||| | Sbjct 4932 AGTCTCGGAGTGAATGTTCTCCATCATGATCTGGAAACCATAGAAGCATCGAGCCTCGGC 4991 Query 133251 CACCTGCACTTCTTGAGCGAAACGCTCGACCAGATTTTCGTTGACGATGCCGTCGCTGGC 133310 |||| ||||| | |||||||||||| || || ||||||||||| || ||| || Sbjct 4992 AGCCTGAACTTCGGAACTGAAACGCTCGACGAGGTTCTCGTTGACGATACCATCGGAAGC 5051 Query 133311 GGCGAAAAAGGCCAGCACGTGCTTGATGAAATGGCGCTCGTTGTCGTT---CAAGCGCTC 133367 ||||| ||||| || ||||| ||| || || |||||||||||||| | | || Sbjct 5052 AGCGAAGAAGGCGAGGACGTGGGAGATAAAGTGACGCTCGTTGTCGTTGAGCTTGTTGTC 5111 Query 133368 CCAGTCGCGCGTGTCCTTGGACAGGTCCACCTCCTCGACGGTCCAAAACGACGCCTCGGC 133427 |||||| | ||||||||| ||||| | ||||||| |||||||||| || ||||| || Sbjct 5112 CCAGTCATGGAGGTCCTTGGAAAGGTCGATCTCCTCGGCGGTCCAAAAGGAAGCCTCTGC 5171 Query 133428 TTTTTTGTACAT 133439 || |||||||| Sbjct 5172 CTTCTTGTACAT 5183 >seq52 Length=95535 Score = 123 bits (136), Expect = 2e-23 Identities = 153/207 (74%), Gaps = 2/207 (1%) Strand=Plus/Minus Query 38241 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCC 38300 || ||||| || || || ||||| |||||||| || ||||||||| |||| |||||| | Sbjct 17852 AAGATGCAGATCTTTGTTAAAACCCTCACGGGTAAGACCATCACCCTCGAGGTCGAGTCT 17793 Query 38301 ACCGACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGA 38359 | |||| | | | |||| | || | || |||| ||||| || || |||||| | || Sbjct 17792 TCGGACACCATCGACAACG-TCAAGGCCAAGATCCAGGACAAGGAAGGTATTCCCCCTGA 17734 Query 38360 CCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTA 38419 || ||||| ||||| | ||| || || ||||| || || | || |||||| ||||| Sbjct 17733 TCAGCAGCGTCTCATCTTCGCCGGTAAGCAGCTCGAAGATGGTCGTACCCTCTCGGACTA 17674 Query 38420 CAACATCCAAAAGGAAGCGACGCTGCA 38446 ||||||||| |||||| | || || || Sbjct 17673 CAACATCCAGAAGGAATCCACCCTTCA 17647 >seq23 Length=140287 Score = 123 bits (136), Expect = 2e-23 Identities = 159/217 (73%), Gaps = 2/217 (1%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || |||||||| || || || || || ||||||||| |||| || ||| | || Sbjct 1549 ATGCAGATCTTCGTAAAGACTCTGACCGGTAAGACCATCACCCTCGAGGTTGAGTCTTCC 1608 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 |||| | | | |||| | || | || || | ||||| ||||| || || |||| || Sbjct 1609 GACACCATTGACAACG-TCAAGGCCAAGATTCAGGACAAGGAGGGGATCCCTCCCGATCA 1667 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||||| ||||||| || || || ||||| || || | || || || |||||||| Sbjct 1668 GCAGCGTCTCATTTTTGCCGGAAAGCAGCTTGAGGATGGACGAACTCTTTCGGACTACAA 1727 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGT 38459 |||||||||||| |||| ||||| ||||| || ||| Sbjct 1728 CATCCAAAAGGAGTCGACCCTGCACTTGGTCCTCCGT 1764 Score = 109 bits (120), Expect = 5e-19 Identities = 156/217 (72%), Gaps = 2/217 (1%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| || || | || ||||| ||||| || |||| |||||| || | Sbjct 1777 ATGCAGATTTTCGTCAAGACCTTGACCGGCAAGACCATTACGCTCGAAGTCGAGTCCTCG 1836 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 |||| | | |||| |||| | || |||| ||||| || || |||||| | ||||| Sbjct 1837 GACACTATCGACAACG-TTAAGGCCAAGATCCAGGACAAGGAAGGCATTCCCCCTGACCA 1895 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||||| || || | || || || ||||| || |||| || |||||| |||||||| Sbjct 1896 GCAGCGTCTTATCTTTGCTGGAAAGCAGCTCGAAGACGGCCGAACCCTCTCGGACTACAA 1955 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGT 38459 |||||| |||||| || ||||| | || || ||| Sbjct 1956 CATCCAGAAGGAAAGCACCTTGCATCTCGTCCTCCGT 1992 >seq100 Length=67640 Score = 105 bits (116), Expect = 7e-18 Identities = 124/165 (75%), Gaps = 2/165 (1%) Strand=Plus/Plus Query 38271 GGCAAAACCATCACCGTCGACGTCGAGGCCACCGACAGCGTGCA-AACGCTTAAAGAAAA 38329 || || ||||||||| | || || ||| | |||||| | | | |||| | || | || Sbjct 61006 GGTAAGACCATCACCCTTGAGGTGGAGTCTTCCGACACCATCGACAACG-TCAAGGCCAA 61064 Query 38330 AATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTCATTTACGCGGGCAAACA 38389 |||| ||||| ||||| || ||| ||||||| ||||| ||||| | ||| || || || Sbjct 61065 GATCCAGGACAAGGAGGGTATCCCCCCCGACCAGCAGCGTCTCATCTTCGCCGGTAAGCA 61124 Query 38390 GCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAAAAGGA 38434 ||| || |||| ||||||||| |||||||||||||| ||||| Sbjct 61125 GCTCGAGGACGGCCGCACCCTCTCGGACTACAACATCCAGAAGGA 61169 >seq53 Length=94643 Score = 105 bits (116), Expect = 7e-18 Identities = 138/191 (72%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || || || || || ||||| ||||| ||||||||| |||| || ||| || | Sbjct 56776 ATGCAGATCTTTGTCAAGACCCTCACCGGCAAGACCATCACCCTCGAGGTTGAGTCCTCG 56717 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 |||| | | | | | || | || || | ||||| || || || || |||| || Sbjct 56716 GACACCATCGACAATGTCAAGGCCAAGATTCAGGACAAGGAAGGCATCCCACCCGATCAG 56657 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 ||||| ||||| | ||| || || ||||| || || | ||||||||| ||||||||| Sbjct 56656 CAGCGACTCATCTTCGCTGGTAAGCAGCTCGAAGATGGCCGCACCCTCTCGGACTACAAC 56597 Query 38424 ATCCAAAAGGA 38434 ||||| ||||| Sbjct 56596 ATCCAGAAGGA 56586 Score = 93.3 bits (102), Expect = 4e-14 Identities = 159/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || || || || || | || ||||| ||||| || |||| |||||| || | Sbjct 56548 ATGCAGATCTTTGTCAAGACTTTGACCGGCAAGACCATTACGCTCGAAGTCGAGTCCTCG 56489 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 |||| | | |||| | || | || || | ||||| ||||| ||||| | ||||| Sbjct 56488 GACACTATCGACAACG-TCAAGGCCAAGATTCAGGACAAGGAGGGCATTCCTCCTGACCA 56430 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||||| || || | || ||||| ||||| || || | || ||||| ||||||||| Sbjct 56429 GCAGCGTCTTATCTTTGCAGGCAAGCAGCTTGAAGATGGCCGTACCCTTTCCGACTACAA 56370 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 ||| || ||||| | || ||||| | || || ||| | | ||||| Sbjct 56369 CATTCAGAAGGAGTCCACCTTGCATCTTGTCCTCCGTCTTCGTGGCGG 56322 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 500087389242240