Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilago_20xerochloae_20[genbank_20GCA_5F001736075.1_202016-09-20] 13,661 sequences; 24,230,715 total letters Query= NC_014765.1 Length=198519 Score E Sequences producing significant alignments: (Bits) Value seq59 358 8e-94 seq213 172 7e-38 seq60 118 1e-21 >seq59 Length=91690 Score = 358 bits (396), Expect = 8e-94 Identities = 765/1140 (67%), Gaps = 12/1140 (1%) Strand=Plus/Minus Query 7022 ATGGCGGCTTGGACCGTCGCCCCGTATGCGACCGCCTCATCGGGGTTAATCGTTTTATTC 7081 |||||||| ||||| | || ||||| || || ||||| |||||||| |||| || || Sbjct 60200 ATGGCGGCCTGGACGGCGGCACCGTAGGCAACAGCCTCGTCGGGGTTGATCGACTTGTTG 60141 Query 7082 AGTTCTTTACCGTTAAAATAATCCGATAACATTTGTTGAATTTTCGGGATTCGTGTCGAT 7141 || || ||||| || | || | | | | || | || || || || || || Sbjct 60140 AGCTCACGTCCGTTGAAGAAGTCGGTGAGGAGCTTCTGGACCTTGGGAATACGGGTGGAA 60081 Query 7142 CCACCGACCAAAACGATTTCATTCACTTTCGATTTATCGATCTTTGAGTCTCGAAGTGTT 7201 |||||||| | |||||||| | || || || ||||| ||||| || || Sbjct 60080 CCACCGACAAGGACGATTTCGTGGACGGAACCCTTGTCAATCTTGGAGTCACGGAGGACC 60021 Query 7202 TTTTCGACAGGTTCCATACATTTACGGAACAAGTCCATACACAGTTCCTCAAAACGTGCA 7261 || ||||| || || || | ||| | ||| || || ||||| ||||| ||| Sbjct 60020 TTCTCGACGGGCTCGATGGTGTGGGAGAAGAGGTCACCGCAGAGCTCCTCGAAACGAGCA 59961 Query 7262 CGGGTAATGGATGTATAGAAATCAACGCCGTCGTATAACGAATCAATTTCAATGGTTGTT 7321 ||||| ||||| || ||||| |||| || ||| | | ||| || || || ||||| || Sbjct 59960 CGGGTGATGGAGGTGTAGAAGTCAATACCCTCGAAGAGCGAGTCGATCTCGATGGTGGTC 59901 Query 7322 TGTGCCGTCGAAGATAACGTTCGCTTTGCGCGCTCACACGCCGTTCGTAAACGACGAAGG 7381 || || | || || | || ||||| || |||||||| || || || | |||||| || Sbjct 59900 TGGGCAGCTGACGAGAGGGTGCGCTTAGCACGCTCACAGGCGGTGCGGAGACGACGGAGA 59841 Query 7382 GCACGCGGGTTACCGGAAATA---TCTTTCTTATGTTTACGTTTAAACTCTTCAGAGAAG 7438 ||||| | ||| |||| | || ||||| | || || || ||||| | |||| Sbjct 59840 GCACGAGCGTT---GGAAGTCAAGTCCTTCTTGTTCTTGCGCTTGAACTCCTGGACGAAG 59784 Query 7439 TGTCGAAGGAGTCTCGAATCGAAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCT 7498 || | ||| | ||||| || |||||||| | ||| || || || ||||| || Sbjct 59783 TGGTTGACGAGACGGTTGTCGAAGTCCTCACCACCAAGGTGGGTGTCACCAGCGGTGGCC 59724 Query 7499 TTGACTTCAAAGATACCTCCTTCAATGTTTAACAACGAAACATCAAACGTACCACCACCC 7558 ||||| || |||||||| | || ||| | | | ||||||||| || ||||| || || Sbjct 59723 TTGACCTCGAAGATACCCTCCTCGATGGTAAGGAGCGAAACATCGAAGGTACCTCCTCCA 59664 Query 7559 AGGTCAAAAATGAGTACGTTCGTATCGTCGTCTTTGTTCTTATCGAGACCGTACGCGATA 7618 || || || ||||| || ||| | || | || | ||||| || |||||||| ||||| Sbjct 59663 AGATCGAAGATGAGGACATTCTTCTCACCCTCAGTCTTCTTGTCAAGACCGTAAGCGATG 59604 Query 7619 GCCGCCGCCGTTGGTTCATTAATAATACGAAGACAGTTCAGGCCAGCAATAGTTGCCGCA 7678 || || || || || || || || ||||| | | ||| || || | ||| | | ||| Sbjct 59603 GCGGCAGCAGTGGGCTCGTTGATGATACGCATAACGTTGAGACCCGAAATGATACCGGCA 59544 Query 7679 TCTTTCGTCGCTTGTCGTTGCGAATCGTTAAAGTAGGCCGGGACCGTTACGACCGCGTCC 7738 || || || || || || || || ||||| ||||| || ||||| || ||||| |||||| Sbjct 59543 TCCTTGGTAGCCTGACGCTGAGAGTCGTTGAAGTAAGCGGGGACAGTGACGACGGCGTCC 59484 Query 7739 GTGACTTTCTTACCGAGATACGATTCCGCGATATCTTTCATTTTGGTAAGAACCATCGAT 7798 | || | |||||| || | || ||| | || ||| ||| |||||||| || Sbjct 59483 TTAACGGTGCCACCGAGGTAAGCCTCAGCGGTCTCACGCATCTTGAGGAGAACCATGGAA 59424 Query 7799 GAAATCTCTTCAGCCGCAAACTGTTTCGTTTCACCGTTAAAATCAACTTCAATCATGGGT 7858 || |||||||| | | || ||| | ||||| || | || | ||| ||| Sbjct 59423 GAGATCTCTTCGGGAGTGAAGGTCTTCTTCTCACCCTTGTACTCGATGCGGATCTGGGGC 59364 Query 7859 TTATCCGCAGCACCGGGGATAACCTTATACGACCAATCTTTCATATCGTCTTGGACCTGT 7918 || | || | | || |||| | | ||| | ||||| ||| || |||| Sbjct 59363 TTGCCGGCGGT---GTTGACGACCTCGAAAGGCCAGTGCTTCATGTCGGACTGAACCTCA 59307 Query 7919 TGGTCCGAAAACTTTCTTCCGATAAGACGCTTTGCATCAAAAACTGTGTTTTTGGGGTTC 7978 ||| ||||| | || || | |||||| ||||| || || ||||| | |||||| Sbjct 59306 GCGTCGTCGAACTTGCGGCCAATCAAACGCTTAGCATCGAAGACAGTGTTGTGAGGGTTC 59247 Query 7979 ATGGCTGTTTGGTTCTTCGCCGCGTCCCCGATAAGACGTTCATTATTTTCCGTAAACGCG 8038 || || |||||||| || || || ||||| ||||| || | | || || ||| Sbjct 59246 ATAGCGACCTGGTTCTTGGCAGCATCACCGATGAGACGCTCCGAGT---CGGTGAAGGCG 59190 Query 8039 ACGTACGATGGGGTCGTTCGATTCCCTTGGTCGTTCGCAATAATTTCTACGCGGTCGTTT 8098 || || || ||||| || || || || |||||||| ||||| | || || ||||||||| Sbjct 59189 ACATATGAAGGGGTAGTGCGGTTACCCTGGTCGTTGGCAATGACCTCGACACGGTCGTTT 59130 Query 8099 TGCCAGACGCCGACGCACGAATACGTTGTTCCTAAATCAATACCGATTGCTTGAGTCATT 8158 ||||| || |||| || || || || || || | ||| |||||||| || | |||||| Sbjct 59129 TGCCAAACAGCGACACAGGAGTAGGTAGTACCGAGATCGATACCGATGGCCTTGGTCATT 59070 >seq213 Length=30293 Score = 172 bits (190), Expect = 7e-38 Identities = 459/694 (66%), Gaps = 22/694 (3%) Strand=Plus/Minus Query 7457 TCGAAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACCT 7516 || || || |||||||| | ||| || || || ||||| || || || |||| ||| Sbjct 14172 TCAAAGTCCTCACCACCGAGGTGAGTGTCACCAGCGGTAGCAAGTACCTCGAAGACACCA 14113 Query 7517 CCTTCAATGTTTAACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGTACG 7576 || || | | |||||||||||| ||||| ||||| || || | | || | Sbjct 14112 GAGTCGATCGAAAGGAGCGAAACATCAAAGGTACCTCCACCAAGATCGTAGACGATAATC 14053 Query 7577 TTCGTATCGTCGTCTTTGTTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTCA 7636 | | ||| |||| || ||| |||||||| || ||||| || || || || || || Sbjct 14052 TGAGACTCGCCGTCCTT---CTTGTCGAGACCATAAGCGATGGCGGCAGCAGTGGGCTCG 13996 Query 7637 TTAATAATACGAAGACAGTTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTCGT 7696 || | ||||| ||| ||| ||||||||||| || | || || || || || || ||| Sbjct 13995 TTGACGATACGGAGAACGTTGAGGCCAGCAATGGTACCAGCGTCCTTGGTGGCCTGACGT 13936 Query 7697 TGCGAATCGTTAAAGTAGGCCGGGACCGTTACGACCGCGTCCGTGACTTTCTTACCGAGA 7756 || | ||||| |||||||| || || || ||||| |||| ||||| || | ||| || Sbjct 13935 TGAGCGTCGTTGAAGTAGGCGGGAACGGTGACGACGGCGTGGGTGACCTTGTGACCAAGG 13876 Query 7757 TACGATTCCGCGATATCTTTCATTTTGGTAAGAACCATCGATGAAATCTCTTCAGCCGCA 7816 || | || ||| | || ||||| || |||||||| | || | ||| || | | Sbjct 13875 TAAGCCTCGGCGGTCTCCTTCATCTTCTGGAGAACCATAGCGGAGACCTCCTCGGGGGTG 13816 Query 7817 AACTGTTTCGTTTCACCGTTAAAATCAACTTCAATCATGGGTTTATCC-GCAGCACCGGG 7875 || ||| | || ||||||| || | ||| ||| || || | | | Sbjct 13815 AAGACCTTCTTCTCGCCGTTAACGGTGACCTGAATGGCGGGCTTGCCCTTCTTCTC---- 13760 Query 7876 GATAACCTT-ATACGACCAATCTTTCATATCGTCTTGGACCTGTTGG--TCCGAAAACTT 7932 || | ||| | || || ||| | ||||| || || || |||| Sbjct 13759 GACCAGCTTGAAGGGAAAAAGCTTGGCGTCCTTCTTG---AGGTCGGACTCACCCCACTT 13703 Query 7933 TCTTCCGATAAGACGCTTTGCATCAAAAACTGTGTTTTTGGGGTTCATGGCTGTTTGGTT 7992 | ||||| |||||||| || ||||| | ||||| | ||||||| ||| | ||||| Sbjct 13702 GCGACCGATGAGACGCTTGGCGTCAAAGATGGTGTTCTCGGGGTTCTGGGCGGCCTGGTT 13643 Query 7993 CTTCGCCGCGTCCCCGATAAGACGTTCATTATTTTCCGTAAACGCGACGTACGATGGGGT 8052 ||| || ||||| |||| ||||| ||| ||||| ||||||||||| ||||| Sbjct 13642 CTTGGCAGCGTCTCCGACGAGACGCTCA------GGGGTAAAAGCGACGTACGAGGGGGT 13589 Query 8053 CGTTCGATTCCCTTGGTCGTTCGCAATAATTTCTACGCGGTCGTTTTGCCAGA-CGCCGA 8111 | || || ||||||||||| | || ||||| || ||| || || || || | || | Sbjct 13588 AATACGGTTTCCTTGGTCGTTGGTGATGATTTCGACACGGCCG-TTAACCTGAGCACCAA 13530 Query 8112 CGCACGAATACGTTGTTCCTAAATCAATACCGAT 8145 | ||||| || || ||||| | ||| ||||| || Sbjct 13529 CACACGAGTAGGTAGTTCCAAGATCGATACCAAT 13496 >seq60 Length=91388 Score = 118 bits (130), Expect = 1e-21 Identities = 281/422 (67%), Gaps = 6/422 (1%) Strand=Plus/Minus Query 7676 GCATCTTTCGTCGCTTGTCGTTGCGAATCGTTAAAGTAGGCCGGGACCGTTACGACCGCG 7735 ||||| || || || | || || || ||||| |||||||| ||||| || | || || Sbjct 15551 GCATCCTTGGTGGCGAGACGCTGAGAGTCGTTGAAGTAGGCAGGGACGGTGATAACAGCC 15492 Query 7736 TCCGTGACTTTCTTACCGAGATACGATTCCGCGATATCTTTCATTTTGGTAAGAACCATC 7795 | | |||| | ||| |||| | | || ||||| || ||||| |||||||| ||||| Sbjct 15491 TTCTTGACCTCCTTTCCGATCTTGGCCTCGGCGATCTCCTTCATCTTGGTAAGGACCATA 15432 Query 7796 GATGAAATCTCTTCAGCCGCAAACTGTTTCGTTTCACCGTTAAAATCAACTTCAATCATG 7855 || || ||||| | || | ||||| || || |||||| | | || || || | | Sbjct 15431 GAGGAGATCTCCTGAGGGGAGAACTGCTTGGTCTCACCGAGGTAGTTGACCTCGATGAAG 15372 Query 7856 GGTTTATCCGCAGCACCGGGGATAACCTTATACGACCAATCTTTCATATCGTCTTGGACC 7915 || | ||| | | || || | | | ||| | | ||| || | | ||| Sbjct 15371 GGGG-AGCCGT--CCTTGTCAATGACGGTGAAGGGCCAGTGCTGCATGTCCTTCTTGACG 15315 Query 7916 TGTTGGTCCGAAAACTTTCTTCCGATAAGACGCTTTGCATCAAAAACTGTGTTTTTGGGG 7975 | |||| | | ||||| |||||||| || || || || || | |||||| Sbjct 15314 TCAGGGTCATCGTATCGGCGACCGATGAGACGCTTGGCGTCGAAGACGGTCTGCTTGGGG 15255 Query 7976 TTCATGGCTGTTTGGTTCTTCGCCGCGTCCCCGATAAGACGTTCATTATTTTCCGTAAAC 8035 |||||||| | |||||||| || || || ||||| ||||| || | || || || Sbjct 15254 TTCATGGCAGCCTGGTTCTTGGCGGCATCACCGATGAGACGCTC---GCTCTCGGTGAAA 15198 Query 8036 GCGACGTACGATGGGGTCGTTCGATTCCCTTGGTCGTTCGCAATAATTTCTACGCGGTCG 8095 |||||||| || ||||| || || || || |||||||| || || || || || || ||| Sbjct 15197 GCGACGTAAGAGGGGGTGGTGCGGTTACCCTGGTCGTTGGCGATGATCTCGACACGCTCG 15138 Query 8096 TT 8097 || Sbjct 15137 TT 15136 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 635024343135240