Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilago_20xerochloae_20[genbank_20GCA_5F001736075.1_202016-09-20] 13,661 sequences; 24,230,715 total letters Query= NC_014766.1 Length=194022 Score E Sequences producing significant alignments: (Bits) Value seq36 315 9e-81 seq113 138 1e-27 seq67 125 9e-24 >seq36 Length=116313 Score = 315 bits (348), Expect = 9e-81 Identities = 1138/1751 (65%), Gaps = 57/1751 (3%) Strand=Plus/Minus Query 111612 CCACAGTACATGTTCATGCGGGTCGCGATCGGTATCCATGGGGAAGATATTGATTCTGTT 111671 || ||| ||||| ||||||| || || | ||||| || || | || || || | Sbjct 39279 CCCCAGCACATGCTCATGCGTGTTGCTGTTGGTATTCACGGCCAGGACATCGAGAGCGCC 39220 Query 111672 TTGGAGACATACGACAAGATGTCCCGTG-GTATGTTCATCCACGCAACACCAACCCTCTT 111730 | ||||| ||| || ||||| | ||| || || |||| | ||||||||||| Sbjct 39219 ATCGAGACGTACAACCTCATGTCGCAAAAGTACTTTACTC-ACGCCTCGCCAACCCTCTT 39161 Query 111731 CAACGCTGGTACACCAAGACCCCAAATGTCCAGTTGTTTCCTTATTGCAAACAAGGAGGA 111790 |||||||||||| || || || | || ||||||||| || | | ||||| || Sbjct 39160 CAACGCTGGTACTCCCCACCCACAGCTCTCGTCCTGTTTCCTTGTTACCATGAAGGATGA 39101 Query 111791 TTCAATCAATGGCATTTACGGCACTCTCACTGAATGTGCCCAAATCTCAAAGTGGGCTGG 111850 || ||| | |||||||||| ||| |||| |||||| ||||| ||| || || Sbjct 39100 CTCGATCGACGGCATTTACGACACCCTCAAGACCTGTGCCATGATCTCCAAGACCGCCGG 39041 Query 111851 TGGTATCGGGATGCACATCCA-TGATGTCAGAGCCAACAAGTCTCGTA--TTAGAGGTAC 111907 ||| || || || |||| || || || ||| | | ||| || || || || Sbjct 39040 TGGCATTGGTTTGAACATTCACTGCATTC-GAGGTACT--GGCTCCTACATTGCCGGCAC 38984 Query 111908 AAATGGTCAATCAG--ATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGC 111965 || ||| |||| | ||||| |||| |||||||| || || ||| ||| || || Sbjct 38983 CAACGGTG--TCAGCAACGGTATCGTTCCCATGCTTCGTGTCTTCAACAACACCGCCCGT 38926 Query 111966 TATGTAAACCAAGCTGG------GCGTCGCAAGGGATCTATCGCAGTCTATCTTGAGCCA 112019 || || |||| | ||| ||||| | || | | || |||| ||||||| Sbjct 38925 TACGTCGACCAGGGTGGTAACAAGCGTCCC---GGTGCCTTTGCCATCTACATTGAGCCT 38869 Query 112020 TGGCACGCGGATATCATGGAGTTCCTTGAGTTGCGTCTCAACCAAGGTGATGAGGAGGCG 112079 |||||| ||||| || | |||||||| || ||||| ||||| ||| | || || | Sbjct 38868 TGGCACTCGGATGTCTTTGAGTTCCTCGACTTGCGCAAGAACCACGGTAAGGAAGAAGTT 38809 Query 112080 CGGTGCCGCGATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGAGAGTTGAG 112139 || ||| || ||||||| |||||||||| |||| ||||||||||||||||| |||||| Sbjct 38808 CGTGCCCGTGAACTCTTCTACGCTCTCTGGGTTCCCGATCTCTTCATGAAGAGGGTTGAG 38749 Query 112140 GAGAGTGGCAATTGGTCTCTCTTTTGTCCAGACAAGGCACCCGGTCTCTCCGATGCCGTG 112199 ||| || ||||||| ||| | || || || || |||||||| |||| | Sbjct 38748 CAGAACGGTGATTGGTCGCTCATGTGCCCCAACGAGTGCCCCGGTCTTGCCGACTGCTAC 38689 Query 112200 GGTGAGGAGTTTGAAGCCCTCTACACAAAGTACGAGGAAGAAAGTCGGGCGACTGCG-AC 112258 ||||| ||||| || |||||| ||||||| ||| |||| | | ||| || Sbjct 38688 GGTGAAGAGTTCGAGCGTCTCTACGAGCGTTACGAGGCCGAAGGTCGCTC-AAAGCGCAC 38630 Query 112259 GGTGCCAGCTGCCGATG-TGTGGAAAGCTATTCTCAAGTCTCAAACCGAGACTGGTACAC 112317 || | || | || | | ||| | || || ||| |||| || |||||||| |||| | Sbjct 38629 CGT-CAAGGCTCAGAAGCTCTGGTACGCCATCCTCGAGTCGCAGACCGAGACCGGTAACC 38571 Query 112318 CATATATGCTTTACAAAGACGCCTGTAACCAAAAGAGTAATCAAAAGAATTTGGGTGTGA 112377 | | || || ||||| ||||| |||| ||| || || ||||| | ||| | Sbjct 38570 CCTTCATCCTCTACAAGGACGCTGCCAACCGCAAGTCCAACCAGAAGAACCTCGGTACTA 38511 Query 112378 TCAAGAGTTCCAACCTCTGTACAGAAATCTTGGAATTTACAGACAAAGATGAGACGGCTG 112437 ||||| | |||||| | || || || ||| | || | | | |||||| |||| Sbjct 38510 TCAAGTGCTCCAACTTGTGCACTGAGATCATCGAGTACAGTGCTCCCGATGAGGTTGCTG 38451 Query 112438 TGTGTAACCTCGCATCAATCGCTCTCCCCAAGTATGTGGATCCAGAGACAAAGACATTTG 112497 | || ||||| || || |||||||| |||| | | || || | || ||| | | Sbjct 38450 TTTGCAACCTTGCCTCCATCGCTCTTCCCACCTTCATCGACCCCGTTACCAAGGTCTACG 38391 Query 112498 ATTATGAAAAACTCCACGAAGTTACGAAAACTGTCACAAAAAACCTAAACAGAGTTATTG 112557 | | | | ||||| ||| | || || || || ||| | |||| | | || | Sbjct 38390 ACTTCAAGCGTTTGCACGAGGTTGCCAAGGCTATCTGCAAGAACTTGAACAAAATCATCG 38331 Query 112558 ATAGAAATTTTTACCCCGTTGAGACTGCTCGTAAATCTAATATGAGACACCGTCCAATTG 112617 ||| || | ||||| |||||| |||||| ||||| ||| | ||||| || |||| Sbjct 38330 ATATCAACTACTACCCTGTTGAGGAGGCTCGTCGTTCTAACATGCGTCACCGCCCCATTG 38271 Query 112618 GTCTCGGTGTCCAAGGTCTCGCGGATGTATTCAT--TCTTTGTCGCCACGCATTTGATTC 112675 || |||||||||| |||||||| |||| ||||| || | | | |||| ||||| || Sbjct 38270 GTATCGGTGTCCAGGGTCTCGCCGATGCCTTCATGATCATGG--GTTACGCCTTTGAGTC 38213 Query 112676 CGACGAAGCGAAGGAAATCAATGCGCGTATATTTGAGACAATGTATCACGCCGCTCTTGA 112735 ||| || | || | | || || ||||| || || ||||||||||| || Sbjct 38212 GCCCGAGGCTCGTCGCTTGAACGTCCAGATCTTCGAGACCATCTACCACGCCGCTCTCGA 38153 Query 112736 GGCGA--GTTCGGAGTTGGCAGAGGTTGATGGTCCATATGAAACCTTTGAGGGTTCTCCA 112793 |||| || | |||||||| ||| |||| | || || |||| | ||||| || Sbjct 38152 -GCGATCGTGC-GAGTTGGCCCAGGAGCATGGCACCTACGAGACCTACGCCGGTTCCCCT 38095 Query 112794 GCTTCACAAGGGGTGCTTCAATTTGATATGTGGGAAGGTGAGACCAAGCT-----TCACT 112848 || || || || | || || | || |||||| |||| ||| || || | Sbjct 38094 GCCTCCCAGGGTGAACTCCAGTACGACATGTGG---GGTGTTACC--CCTTCCGATCTTT 38040 Query 112849 ACGACTGGGACGCTCTCAAGGAACGCATCAAGGAGAAGGGTCTTCGTAACAGTCTTTTGA 112908 ||||||| | ||||||| ||| || | |||||||| ||| || ||| Sbjct 38039 GGGACTGGGCTTCGCTCAAGGCCAAGATCGCCAAGCACGGTCTTCGCAACTCGCTCTTGC 37980 Query 112909 TGGCACCAATGCCAACAGCCTCCACCGCACAAATCTTGGGTAATAATGAATGCTTTGAAC 112968 | || || ||||| || || ||||| || ||||||||| || |||||||| || | Sbjct 37979 TCGCTCCCATGCCTACCGCATCCACAAGTCAGATCTTGGGTTTCAACGAATGCTTCGAGC 37920 Query 112969 CCTACACGACGAACATCTA-TCTGAGAAGAACCCTCGCGGGAGAGTTTGTGATTGTCAAC 113027 ||||||| | |||||||| ||| | | ||| || || || || | | |||||| Sbjct 37919 CCTACACCTCCAACATCTACTCT-CGTCGTGTCCTTGCTGGTGAATTCCAGGTCGTCAAC 37861 Query 113028 AAGCATCTCGTGGAT----GACCTCAAAGAGATTGGTCTCTGGTCCAAGGATATGAAGGA 113083 | | | || | | || ||| ||| || | ||| | | |||||| | Sbjct 37860 ---CCT-TGGTTGCTCCGCGAACTCGTCGAGCAAGGATTGTGGAACGACACCATGAAGAA 37805 Query 113084 TCTCATGGTGAAAGCGGGTGGTTCCATTCAAAATATTGTGGATATTCCAGATGAAATTAA 113143 | || | ||||||||||| || || || | |||||| || || || Sbjct 37804 CCGTATTATCGCTCACGGTGGTTCCATCCAGAACGTTCCTGGTATTCCTGACCGTATCAA 37745 Query 113144 GAAGTTGTACCGCACAGTTTGGGAAATCAAGATGAAGGATGTCATTGACATGGCCGCAGA 113203 |||| | ||| || |||||||| ||| ||||| | |||| ||||||||||| || Sbjct 37744 GAAGCTCTACAAGACTGTTTGGGAGATCTCCCAGAAGGCTATCATCGACATGGCCGCTGA 37685 Query 113204 TCGTGGTCGCTTCATTGATCAAAGTCAAAGTATGAATCTATTCATGGAAAGTCCAACGAT 113263 ||| ||| |||||| || |||| | || | | || ||| | | Sbjct 37684 TCGAGGTGCTTTCATTTGCCAGTCTCAATCCCTCAACATCCACTTGTCGGCTCCTTCCTT 37625 Query 113264 --GTCCAAGCTCTCTTCTATGCACATGTACAGTTGGAAGAAGGGTCTCAAAACGGGGATG 113321 ||| || | |||| |||||| | ||| ||||||||||||||||||| || || | Sbjct 37624 CGGTC--AGTTGACTTCGATGCACTTCTACGGTTGGAAGAAGGGTCTCAAGACCGGTACC 37567 Query 113322 TATTACCTCCG 113332 || |||||||| Sbjct 37566 TACTACCTCCG 37556 >seq113 Length=59678 Score = 138 bits (152), Expect = 1e-27 Identities = 262/381 (69%), Gaps = 6/381 (2%) Strand=Plus/Plus Query 176689 CTTGAGAAGACTTGGCCAGAAGTAGTGAATCATATTGAGAATGAGACCCTTGATGTGGGA 176748 |||||| || ||| |||||| || | | |||| |||||||||||||| || || Sbjct 56786 CTTGAGCAGCGATGGGTAGAAGTGGTCGAGGAAGTTGATGATGAGACCCTTGATATGTGA 56845 Query 176749 ACCGTCGTTATCGGCATCCGTCATGATCATGAGACGACCATACCG-AAGCTCGGAAACAT 176807 ||| |||| ||| ||| ||||||||||||| || || || || ||||| || | | Sbjct 56846 ACCATCGTGATCCTGATCGGTCATGATCATGATACTGCCGTATCGCAAGCTACTAA-CGT 56904 Query 176808 CTTGATAGTCCTTACCCTGTTGAAGACCCAAGATCTTCTTGAGATCGTTGAACTCTTGGT 176867 | |||| | ||| || ||||||||||| | || | |||| | |||| ||| || Sbjct 56905 CAAGATATTGCTTGCCGTGTTGAAGACCGAGAATTTCTTTGATGGCTTTGATTTCTGCGT 56964 Query 176868 TTGATGTGAGCTGTGTGACAGAGGCATCACGAACATTCTTACACTTCCCACGAAGAGGGA 176927 | ||| ||| | || ||| |||||||| || | ||| ||||| || || | Sbjct 56965 TCTTCATGATCTGGTCGTGAGTGGCCTCACGAACGTTGAGAAGCTTACCACGGAGCGGAA 57024 Query 176928 AGACACCGTAGTGATCGCGACCAACCACAGAGAGACCCGCAACCGCGAGCGTTTTCGCAG 176987 |||||||||||| || ||||| || || || || ||||| ||||| | || || | Sbjct 57025 AGACACCGTAGTTGTCACGACCCACTTCAACAAGGCCGGCAACAGCGAGAGCCTTGGCGG 57084 Query 176988 AATCACCCTCTGTCACGATGAGTGTACACTTGCCAGATT--GTGCCGTACCCGCCTTGTT 177045 | ||||| || || | ||||||||||| | || || |||| ||| || ||||| Sbjct 57085 AGTCACCTTCGGTGAGAATGAGTGTACAGTCCTTAGCTTTCCTGCC--ACCTGCATTGTT 57142 Query 177046 CGCATCATCCAATTTGGGAAT 177066 ||||| || | ||||| || Sbjct 57143 GGCATCTTCGAGCTTGGGGAT 57163 >seq67 Length=86059 Score = 125 bits (138), Expect = 9e-24 Identities = 117/149 (79%), Gaps = 0/149 (0%) Strand=Plus/Minus Query 102172 CCTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCT 102231 |||| || || || ||| | || ||||| |||||||||||||||||||| || |||| Sbjct 4798 CCTTCGCCGAACGTCTCGTTGCCTTTGCCGCAGTTGAGGGTATCTTCTTCTCCGGCTCCT 4739 Query 102232 TCTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACG 102291 || | | || | |||||||||||||| ||||| ||||| || ||| ||||||||||| Sbjct 4738 TCGCCTCCATCTTCTGGCTCAAGAAGCGTGGTCTTATGCCCGGACTCACCTTCTCCAACG 4679 Query 102292 AGCTTATCTCTCGTGACGAGGGACTCCAC 102320 |||| ||||| || ||||| || || ||| Sbjct 4678 AGCTCATCTCACGCGACGAAGGTCTTCAC 4650 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 620636400475920