Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilago_20xerochloae_20[genbank_20GCA_5F001736075.1_202016-09-20] 13,661 sequences; 24,230,715 total letters Query= NC_014767.1 Length=184095 Score E Sequences producing significant alignments: (Bits) Value seq36 266 4e-66 seq73 109 6e-19 seq113 87.8 2e-12 >seq36 Length=116313 Score = 266 bits (294), Expect = 4e-66 Identities = 1056/1641 (64%), Gaps = 47/1641 (3%) Strand=Plus/Plus Query 109507 GACTGAGACTGATCGATGAATCGACCACGATCAGCCGCCATGTCGATGATACACTTTTGG 109566 || |||||||| ||||| ||| |||||||| ||||||||||||||| ||| ||| Sbjct 37655 GATTGAGACTGGCAAATGAAAGCACCTCGATCAGCGGCCATGTCGATGATAGCCTTCTGG 37714 Query 109567 CTAATTTCCCAGACAGTCTTGTACAAATTCTTGATATCATCGGGAATGTCCACGAT-GTT 109625 || ||||| ||||||||||| | ||||||||| || ||||| ||| || ||| Sbjct 37715 GAGATCTCCCAAACAGTCTTGTAGAGCTTCTTGATACGGTCAGGAATA-CCAGGAACGTT 37773 Query 109626 TTGAATAGAGCCACC---AGCCTTCACCATGAGATCCTTCATCTCTTTCGA-CCAGAGAC 109681 || || || ||||| ||| | | | | | |||||| | ||| ||| | | Sbjct 37774 CTGGATGGAACCACCGTGAGCGATAA---TACGGTTCTTCATGG-TGTCGTTCCACAATC 37829 Query 109682 CGACCTTTTTGAGATCGT----CAACAAGATGCTTGTTGACCACGACAAATTCACCAGCA 109737 | || ||| ||| |||| | | | ||| |||| || ||||||||||| Sbjct 37830 CTTGCTCGACGAGTTCGCGGAGCAACCA-AGGGTTGACGACCTGGA---ATTCACCAGCA 37885 Query 109738 AGTGTGCGTCGGAGGTAGATGTTAGTCGTGTAGGGTTCGAAACACTCATTGTTGCCTAGG 109797 || || || ||||||||| | |||||||| ||||| || || ||| || | | Sbjct 37886 AGGACACGACGAGAGTAGATGTTGGAGGTGTAGGGCTCGAAGCATTCGTTGAAACCCAAG 37945 Query 109798 ATTTGTGCAGTGGAAGCTGTGGGCATGGGAGCCATGAGAAGACTGTTTCGGAGACCCTTC 109857 || || ||||| || || ||||||||||| | | || ||| || ||||| | | Sbjct 37946 ATCTGACTTGTGGATGCGGTAGGCATGGGAGCGAGCAAGAGCGAGTTGCGAAGACCGTGC 38005 Query 109858 GTCTTTACCCGCTCACGCATTGCGT----CCCAATCATAACGACCACTAAATTTAGTCTC 109913 || | || || ||| | |||| || || || | | || Sbjct 38006 ---TTGGCGATCTTG-GCCTTGAGCGAAGCCCAGTCCCAAAGATCGGAAGGGGTAA---- 38057 Query 109914 ACCATCCCACATATCTGGTTGAAGTACACCCTCAGCAGCAGGAGAACCCTTGAAACTCTC 109973 || ||||||| || || ||| |||||| | ||||| ||||| | | |||| Sbjct 38058 --CACCCCACATGTCGTACTGGAGTTCACCCTGGGAGGCAGGGGAACCGGCGTAGGTCTC 38115 Query 109974 GTACGACCCCTCAACCTCGGCCAACTCGGATGAAGCCTCTAGTGCCGCATGATACATAGT 110033 ||| | || | ||| |||||||||| | || ||| || || || || || || || Sbjct 38116 GTAGGTGCCATGCTCCTGGGCCAACTCGCACGATCGCTCGAGAGCGGCGTGGTAGATGGT 38175 Query 110034 CTCAAAAATATGAGCATTCATGAGGCGAGACTCTTCACAGTCGAAGGGAAGACCACAAAG 110093 ||| || || || | |||| | | |||| ||| | || |||| ||| | Sbjct 38176 CTCGAAGATCTGGACGTTCAAGCGACGAGCCTCGGGCGACTCAAAGGCGTAACCCATGAT 38235 Query 110094 AATAAACACATCCGCTAGACCCTGAACACCGAGACCAATGGGGCGATGCTTCATGTTAGA 110153 || || |||| || |||||||| ||||||| |||||||||||| || ||||||||| Sbjct 38236 CATGAAGGCATCGGCGAGACCCTGGACACCGATACCAATGGGGCGGTGACGCATGTTAGA 38295 Query 110154 GCGTCGAGCAGTTTCTACGGGGTAAAAGTTGCGGTCGATGACCCGATTGAGATTCTTCGT 110213 || ||||| || || ||||| ||||| ||||||| || | ||||| Sbjct 38296 ACGACGAGCCTCCTCAACAGGGTAGTAGTTGATATCGATGATTTTGTTCAAGTTCTTGCA 38355 Query 110214 CACAGTCTTCGTGATTTCATGGA---GTTTGTCGTAATCGAACGTTTTCGTCTCCTTATT 110270 | || ||| | | || || | | ||| || | || | || || | | Sbjct 38356 GATAGCCTTGGCAACCTCGTGCAAACGCTTGAAGTCGTAGACC---TTGGTAACGGGGTC 38412 Query 110271 GACATATTTGGGGAGAGCAATAGACGCAAGATTGCACACAGAAGTCTCGTCTTTGTCGGT 110330 || | |||| ||||| || || ||||| ||||| |||| | ||| || | | Sbjct 38413 GATGAAGGTGGGAAGAGCGATGGAGGCAAGGTTGCAAACAGCAACCTCATCGGGAGCACT 38472 Query 110331 GTATTCCAAAATTTCCGTACACAAGTTGGAACTCTTAATGACACCCAAGTTCTTCTGATT 110390 ||| || | || || || ||||||||||| | ||| || ||| | ||||||||| || Sbjct 38473 GTACTCGATGATCTCAGTGCACAAGTTGGAGCACTTGATAGTACCGAGGTTCTTCTGGTT 38532 Query 110391 CGATTTGGAGTTGCATGCATCCTTATAGAGCATGTATGGGGTACCAGTTTCCGTCTGTGA 110450 || ||| |||| || ||||| ||||| ||| | ||| |||| || || ||||| || Sbjct 38533 GGACTTGCGGTTGGCAGCGTCCTTGTAGAGGATGAAGGGGTTACCGGTCTCGGTCTGCGA 38592 Query 110451 CTTGAGAATGGCCTTCCATA-CATCGGCGGCGGGGACAGTTGCG-TTAGCGAGACCTTCC 110508 || ||| ||||| | ||| | | || | || ||| | |||| || | | ||||||| Sbjct 38593 CTCGAGGATGGCGTACCAGAGCTTCTG-AGCCTTGAC-GGTGCGCTTTGAGCGACCTTCG 38650 Query 110509 TCCTCGTACTTGGTGTACAAGTCCTCAAATTCCTGTCCGTACACATCAGAAAGACCCTTC 110568 ||||||| ||| | ||| || || | ||||| || | |||||| Sbjct 38651 GCCTCGTAACGCTCGTAGAGACGCTCGAACTCTTCACCGTAGCAGTCGGCAAGACCGGGG 38710 Query 110569 GCCTTGTCGGGACAGAAGAGGGACCAATTTCCACCCTCCTCAACCCTCTTCATGAACAGG 110628 || || ||| || | ||| ||||||| || || |||||||||||||||||| || Sbjct 38711 CACTCGTTGGGGCACATGAGCGACCAATCACCGTTCTGCTCAACCCTCTTCATGAAGAGA 38770 Query 110629 TCAGGAATCCACATCGCCGAGAAAAGGTCACGGCAACGAGCCTCTTCATCACCTTGGTTG 110688 || |||| ||| | || |||| || |||||| |||| | ||||| | ||| ||||| Sbjct 38771 TCGGGAACCCAGAGAGCGTAGAAGAGTTCACGGGCACGAACTTCTTCCTTACCGTGGTTC 38830 Query 110689 AGGCGTAGCTCCAAAAAGTCCATGATATCCGAGTGCCATGGTTCGAGATAGACAGCGATG 110748 ||| | || | || || | || |||||||||||| || || | |||| || | | Sbjct 38831 TTGCGCAAGTCGAGGAACTCAAAGACATCCGAGTGCCAAGGCTCAATGTAGATGGCAAAG 38890 Query 110749 GATCCCTTACG---ACGACCCGCCTGGTTAACATAGCGTGCTGTGGCATTGAAGACCCTG 110805 | || ||| ||| |||||| || || || || ||| |||||||| | Sbjct 38891 GCACCGGGACGCTTGTTACCACCCTGGTCGACGTAACGGGCGGTGTTGTTGAAGACACGA 38950 Query 110806 AGCATAGGAATAATTCCATCGGATTGACCATTTGTACCCCTAATTCTGGACTTATTGGCA 110865 ||||| |||| || || | | ||| || || || ||| ||| | | | Sbjct 38951 AGCATGGGAACGATACCGTTGCTGACACCGTTGGTGCCGGCAATGTAGGAGCCAGTACCT 39010 Query 110866 CGAATGTCGTGGATATGCATACCAATACCACCCGCCCACTTACTAATTTGTGCACA-CTC 110924 |||||| ||| || | || |||||| ||||| || ||| || ||||| || Sbjct 39011 CGAATGCAGTGAATGTTCAAACCAATGCCACCGGCGGTCTTGGAGATCATGGCACAGGTC 39070 Query 110925 TGTGAGTGTACCATAAATACCATCAATCGAATCTGCCTTGTTGGCAATTAGAAAGCAAGA 110984 | |||| || | ||||| || || ||||| || |||| ||| || || || || || Sbjct 39071 T-TGAGGGTGTCGTAAATGCCGTCGATCGAGTCATCCTTCATGGTAACAAGGAAACAGGA 39129 Query 110985 AGACATCTGAGGACGAGGCGTTCCCGCATTGAAGAGTGTAGGTGTCGCATGAATGAACAG 111044 || | ||| || | || || || || |||||||| || || | || ||| | || Sbjct 39130 CGAGAGCTGTGGGTGGGGAGTACCAGCGTTGAAGAGGGTTGGCGAGGCGTGAGTAAAGTA 39189 Query 111045 ACCTTGGGACATCTTGTTGTATGTGTCGAGTGCGGAGGGTACATCTTTACCGTGAATACC 111104 ||| ||||| |||||| || |||| ||| | || | ||||||||||| Sbjct 39190 CTTTTGCGACATGAGGTTGTACGTCTCGATGGCGCTCTCGATGTCCTGGCCGTGAATACC 39249 Query 111105 AATGGCAACTCGCATGAACAT 111125 || ||||| ||||||| ||| Sbjct 39250 AACAGCAACACGCATGAGCAT 39270 >seq73 Length=81581 Score = 109 bits (120), Expect = 6e-19 Identities = 323/487 (66%), Gaps = 17/487 (3%) Strand=Plus/Minus Query 11505 ATCGAAACGACCTGGGCGGAGTAGAGCATCATCAAGAATATCGACACGGTTTGTAGCGGC 11564 |||||| || || || || | | ||| | ||||| | ||| ||||| ||| | || Sbjct 63804 ATCGAATCGTCCAGGACGCATCAAGGCAGCGTCAAGCACATCCGGTCGGTTAGTACCTGC 63745 Query 11565 AATGACTACAATGCCAGTCTCATTGTCGAAACCGTCCATTTCTGTGAGAAGCTGGTTGAT 11624 || || || | | |||| | ||||||| ||||| | || | || ||||| Sbjct 63744 AAGCACAACGACGTGCTCCTCAGTACCGAAACCATCCATCTGCACCAGCAACTCGTTGAG 63685 Query 11625 CGTCTGTTCACGCTCATCGTTGGAGGGCA---TACCACC--TGCCGAACGCTTCTTACCG 11679 |||| ||| ||||| || || | | || || |||| ||| |||||||| Sbjct 63684 CGTCGATTCTCGCTCGTCATTACCACCAAAGTTGCCTCCCTTGCC--ACGGCTCTTACCG 63627 Query 11680 ACAGCGTCAATCTCATCGATGAATACGATACACGGTTGGTTGGCACGTGCCTGTTCGAAA 11739 | ||| || |||||||| || || | ||| || || || | | || | ||| | || Sbjct 63626 ATAGCATCGATCTCATCAATAAAGATGATGCAAGGAGCGT-GCTTCTTGGC-GTTGGCAA 63569 Query 11740 AGTT--CACGTACACGCTTCGCTCCAACACCTACGAACATCTCAACGAAGTTTGCGGCAG 11797 | | | || ||||| | | |||||||| || |||||||| ||||| | | ||| Sbjct 63568 ACATGTCTCGGACACGGCTAGGACCAACACCGACAAACATCTCGACGAACTCGGAACCAG 63509 Query 11798 AACACTGAATG-AAGGGAACATTAGACTCACCAGCGATGGCTCGAGCGAGGAGAGTCTTA 11856 | || ||| | || || ||| || ||||||||| | || || || | |||||| Sbjct 63508 AG-ACGGAAAGGAAAGGTACACCAGCCTCACCAGCAGTAGCCTTGGCTAGCAAGGTCTTA 63450 Query 11857 CCCGTACCAGGTGCACCAGCGAGAAGGGCGCCACGGGGGATCTTGGCACC--ACTTCCAA 11914 || ||||| || | ||||| ||||| ||| ||||| |||||||||||||| ||| Sbjct 63449 CCAGTACCGGGGGGACCAGAGAGAATGGCACCACGAGGGATCTTGGCACCGAGCTT--TT 63392 Query 11915 AGTAGCGCTCAGGCTTCTTGAGGAAGTCCACAATCTCCTCAAGTTCCTCCTTGGCGGAGT 11974 ||| ||| ||||| |||||||||| |||| |||| | || ||||| || || Sbjct 63391 CGTACTTCTCGGGCTTTTTGAGGAAGTTGACAAACTCCATGATCTCTTCCTTTGCTTCGT 63332 Query 11975 CGATACC 11981 | ||||| Sbjct 63331 CCATACC 63325 >seq113 Length=59678 Score = 87.8 bits (96), Expect = 2e-12 Identities = 168/245 (69%), Gaps = 2/245 (1%) Strand=Plus/Plus Query 167357 AACCCGTACCAATACCTTCAGTACCGTTTACCAAAACCATCGGTAGAGTTGGCATGTAAA 167416 |||| ||||| |||||||||| |||||| | || ||| ||| | |||||||| Sbjct 55939 AACCGGTACCGATACCTTCAGCACCGTTGAGCAGCACCTGCGGCACCACAGGCATGTACC 55998 Query 167417 AGTCGGGTTCAATGGAACGACCATCATCATCCAAGTAGTTGAGAATGGCATCATCTTTGG 167476 | | || || ||| ||||||||||||||| ||| | || | || ||||| || Sbjct 55999 ACTGAGGCTCGATGCTCTGACCATCATCATCCAGGTATTCAAGCAAAGCGTCATCGTTCT 56058 Query 167477 GATCGAAGAGCTTTCGAGCCTCCTTGGTAAGCTTCGTAAAGATGTACCTCGTCTGAGAC- 167535 | |||||| |||| ||||| ||| || || || ||||| | | ||| | Sbjct 56059 GGGGGAAGAGAGCGCGAGTGATCTTGGGCAGCGCGGTGAAAATATACCT-GGCCGAGGCA 56117 Query 167536 GCATCCTTGCCACCCATGAGGCGTGTACCAAATTGACCACATGGCTCGAGAAGATTGATG 167595 ||||| || ||||| | | || ||||| |||||||| | ||||||||| | |||| | Sbjct 56118 GCATCTTTACCACCGAGCAAACGAGTACCGAATTGACCCCTTGGCTCGAGCAAGTTGACG 56177 Query 167596 TTATT 167600 || || Sbjct 56178 TTGTT 56182 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 588875424985800