Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilago_20xerochloae_20[genbank_20GCA_5F001736075.1_202016-09-20] 13,661 sequences; 24,230,715 total letters Query= NC_014789.1 Length=184409 Score E Sequences producing significant alignments: (Bits) Value seq36 212 7e-50 seq67 98.7 1e-15 >seq36 Length=116313 Score = 212 bits (234), Expect = 7e-50 Identities = 890/1390 (64%), Gaps = 25/1390 (2%) Strand=Plus/Plus Query 105935 TAGATGTTCGTCGTGTAGGGTTCAAAGCATTCATTATTACCCAAGATTTGTGCGGTGGAG 105994 |||||||| | |||||||| || |||||||| || ||||||||| || ||||| Sbjct 37901 TAGATGTTGGAGGTGTAGGGCTCGAAGCATTCGTTGAAACCCAAGATCTGACTTGTGGAT 37960 Query 105995 GCTGTTGGCATTGGTGCCATCAAAAGACTGTTACGAAGACCCTTTTCCTTGATGCGTTCC 106054 || || ||||| || || | ||| || ||| |||||||| | | ||| || Sbjct 37961 GCGGTAGGCATGGGAGCGAGCAAGAGCGAGTTGCGAAGACCGTGCTTGGCGATCTTGGCC 38020 Query 106055 TTGAGAACATCCCAGTCGTA--GTTGAGCTTGGTTTCACCTTCCCACATATCAAATTGAA 106112 ||||| | ||||||| | | | | || | | | ||||||| || | || | Sbjct 38021 TTGAGCGAAGCCCAGTCCCAAAGATCGGAAGGGGT--AACACCCCACATGTCGTACTGGA 38078 Query 106113 GCACCCCTTGGGACGTGGGAGAACCCTCAAATGTCTCATAGGAACCTTGGGCTTCAGCCA 106172 | | || ||||| | || ||||| | | ||||| |||| || || | | |||| Sbjct 38079 GTTCACCCTGGGAGGCAGGGGAACCGGCGTAGGTCTCGTAGGTGCCATGCTCCTGGGCCA 38138 Query 106173 ATTCACA-GCTCGCCTCCAGGGATGCGTGATACATGGTTTCAAAGATACGAGCATTCATC 106231 | || || | |||| || || | ||||| || ||||| || ||||| | | |||| Sbjct 38139 ACTCGCACGATCGC-TCGAGAGCGGCGTGGTAGATGGTCTCGAAGATCTGGACGTTCAAG 38197 Query 106232 TCCTTGGCTTCATCTGAATCAAATGCGTAGCGGCACAAAATAAATACATCCGCGAGACCT 106291 || || || ||||| ||||| | | || || |||| |||||||| Sbjct 38198 CGACGAGCCTCGGGCGACTCAAAGGCGTAACCCATGATCATGAAGGCATCGGCGAGACCC 38257 Query 106292 TGAACACCCAAACCAATAGGTCTGTGTCGCATATTAGACTTTCGCGCAGTCTCAACGGGA 106351 || ||||| | |||||| || | ||| ||||| ||||| || || |||||| || Sbjct 38258 TGGACACCGATACCAATGGGGCGGTGACGCATGTTAGAACGACGAGCCTCCTCAACAGGG 38317 Query 106352 TAAAAATTTCTGTCAATGACTCGGTTTAGATTTTTGGTAACAATCTTTGTGATTTCATG- 106410 || | || | || |||| | ||| | || ||| | | ||| | | || || Sbjct 38318 TAGTAGTTGATATCGATGATTTTGTTCAAGTTCTTGCAGATAGCCTTGGCAACCTCGTGC 38377 Query 106411 AAGTTTTTCATAATCAAAAGTGCGAGTCTCTTCATTGACATACTTTGGAAGGGCGATTGA 106470 || || | | || | || | | || | | ||||| ||||| || Sbjct 38378 AAACGCTTGA-AGTCGTAGACCTTGGTAACGGGGTCGATGAAGGTGGGAAGAGCGATGGA 38436 Query 106471 TGCCAAATTGCAAACAGCCGTCTCATCCTTATCTGTGTACTCTAAAATTTCTGTACACAA 106530 || | ||||||||||| |||||| | | ||||||| | || || || ||||| Sbjct 38437 GGCAAGGTTGCAAACAGCAACCTCATCGGGAGCACTGTACTCGATGATCTCAGTGCACAA 38496 Query 106531 GTTGGAACTCTTAATCGTCCCCAAATTCTTTTGGTTACTCTTTTTGTTGCACGCATCCTT 106590 |||||| | ||| || || || | ||||| ||||| ||| |||| || ||||| Sbjct 38497 GTTGGAGCACTTGATAGTACCGAGGTTCTTCTGGTTGGACTTGCGGTTGGCAGCGTCCTT 38556 Query 106591 GTAGAGCATGTAGGGCGTCCCCGTCTCCGTCTGTGACTTGAGAATTGCCTTCCACA-CAT 106649 |||||| ||| |||| | || ||||| ||||| |||| ||| || || | ||| | | | Sbjct 38557 GTAGAGGATGAAGGGGTTACCGGTCTCGGTCTGCGACTCGAGGATGGCGTACCAGAGCTT 38616 Query 106650 CGGCGGCTGGTACAATGGCGTTGGCCCGTCCCTCCGCCTCGTACTTTGTGTAGAGGGCTT 106709 | | | || | || || || | || || || |||||||| |||||| | Sbjct 38617 CTGAGCCTTG-ACGGTGCGCTTTGAGCGACCTTCGGCCTCGTAACGCTCGTAGAGACGCT 38675 Query 106710 CAAACTCCTCACCCACCGCGTCGGAGAGACCTGGTGCCTTGTCTGGACAGAAAAGAGACC 106769 | ||||| ||||| ||||| ||||| || || || || || | || |||| Sbjct 38676 CGAACTCTTCACCGTAGCAGTCGGCAAGACCGGGGCACTCGTTGGGGCACATGAGCGACC 38735 Query 106770 ATTGACCACCCTCCTCAACCCGCTTCATGAAAAGGTCTGGAATCCACAGGGATGAAAAGA 106829 | | ||| || |||||||| ||||||||| || || |||| ||| || | | |||| Sbjct 38736 AATCACCGTTCTGCTCAACCCTCTTCATGAAGAGATCGGGAACCCAGAGAGCGTAGAAGA 38795 Query 106830 GATCTCTACACCGAGCCTCTTCGTCACCTTGGTTGAGTCGTAACTCAAGGAACTCCATGA 106889 | || | ||| | ||||| | ||| ||||| || || || |||||||| | || Sbjct 38796 GTTCACGGGCACGAACTTCTTCCTTACCGTGGTTCTTGCGCAAGTCGAGGAACTCAAAGA 38855 Query 106890 TATCCGCGTGCCATGGCTCAAGATAGACTGCGATAGATCCCTTTCGACGC------CCAG 106943 ||||| |||||| ||||||| |||| || | | || ||||| ||| Sbjct 38856 CATCCGAGTGCCAAGGCTCAATGTAGATGGCAAAGGCACC---GGGACGCTTGTTACCAC 38912 Query 106944 CTTGATTTACATAGCGCGCTGTGGCGTTAAATACGCGAAGCATTGGAATAATACCAT--C 107001 | || | || || || || ||| ||| || || |||||||| |||| ||||| | | Sbjct 38913 CCTGGTCGACGTAACGGGCGGTGTTGTTGAAGACACGAAGCATGGGAACGATACCGTTGC 38972 Query 107002 TGATTGACCATTTGTCCCCCGAATACGAGATTTATTGGCTCTCACATCATGGATGTGCAT 107061 ||| ||| || || || ||| || | | ||| | || |||| || Sbjct 38973 TGA--CACCGTTGGTGCCGGCAATGTAGGAGCCAGTACCTCGAATGCAGTGAATGTTCAA 39030 Query 107062 CCCAATACCCCCAGCCCACTTTGAGATTTGCGCACACTCCGTAAGAGTTCCATAGATACC 107121 ||||| || || || ||| ||||| ||||| | | || || | || || || Sbjct 39031 ACCAATGCCACCGGCGGTCTTGGAGATCATGGCACAGGTCTTGAGGGTGTCGTAAATGCC 39090 Query 107122 GTTGATTGAGTCCTCCTTGTTGGCGATAAGGAAGCAACTGGACATCTGCGGTCTTGGTGT 107181 || ||| ||||| ||||| ||| | |||||| || || | ||| || || || Sbjct 39091 GTCGATCGAGTCATCCTTCATGGTAACAAGGAAACAGGACGAGAGCTGTGGGTGGGGAGT 39150 Query 107182 ACCAGCATTGAAGAGGGTTGGTGTTGCGTGAATGAACATAC-CTTGGGACATCTTGTCGT 107240 |||||| |||||||||||||| | |||||| | || ||| ||| ||||| || || Sbjct 39151 ACCAGCGTTGAAGAGGGTTGGCGAGGCGTGAGT-AAAGTACTTTTGCGACATGAGGTTGT 39209 Query 107241 ATGTCTCCAAGACAGAATCAATGTCTTCCCCGTGGATGCCGATGGCCACACGCATAAACA 107300 | ||||| | | | || ||||| | ||||| || || | || |||||||| | || Sbjct 39210 ACGTCTCGATGGCGCTCTCGATGTCCTGGCCGTGAATACCAACAGCAACACGCATGAGCA 39269 Query 107301 TGTATTGGGG 107310 ||| ||||| Sbjct 39270 TGTGCTGGGG 39279 >seq67 Length=86059 Score = 98.7 bits (108), Expect = 1e-15 Identities = 111/149 (74%), Gaps = 0/149 (0%) Strand=Plus/Plus Query 117285 GTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGGCCTGGCATGAGACC 117344 ||| ||||| || || || || || || || || |||||| || || ||||| ||||| Sbjct 4650 GTGAAGACCTTCGTCGCGTGAGATGAGCTCGTTGGAGAAGGTGAGTCCGGGCATAAGACC 4709 Query 117345 CCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATACCCTCCACACA 117404 |||||||| | ||| | || | | ||| || |||||||||||||||||||| || Sbjct 4710 ACGCTTCTTGAGCCAGAAGATGGAGGCGAAGGAGCCGGAGAAGAAGATACCCTCAACTGC 4769 Query 117405 CGCAAACGCAAAAAGGCGCTCGGCGAAGG 117433 ||||| |||| || || |||||||||| Sbjct 4770 GGCAAAGGCAACGAGACGTTCGGCGAAGG 4798 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 589880053403640