Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilago_20xerochloae_20[genbank_20GCA_5F001736075.1_202016-09-20] 13,661 sequences; 24,230,715 total letters Query= NC_015326.1 Length=346754 Score E Sequences producing significant alignments: (Bits) Value seq53 165 2e-35 seq52 143 6e-29 seq23 143 6e-29 seq100 125 2e-23 >seq53 Length=94643 Score = 165 bits (182), Expect = 2e-35 Identities = 162/209 (78%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 ||||| || | |||||||| || ||||| ||||| |||| ||| || | |||||||| Sbjct 56340 ACAAGATGCAAGGTGGACTCCTTCTGAATGTTGTAGTCGGAAAGGGTACGGCCATCTTCA 56399 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 |||||||| ||||| |||||||| || || ||||| ||||||||||| || ||||| ||| Sbjct 56400 AGCTGCTTGCCTGCAAAGATAAGACGCTGCTGGTCAGGAGGAATGCCCTCCTTGTCCTGA 56459 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTT 195111 || || ||||||||| || || |||||||| || ||||| || |||| ||||| Sbjct 56460 ATCTTGGCCTTGACGTTGTCGATAGTGTCCGAGGACTCGACTTCGAGCGTAATGGTCTTG 56519 Query 195112 CCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || |||||||| || || || | ||||| Sbjct 56520 CCGGTCAAAGTCTTGACAAAGATCTGCAT 56548 Score = 140 bits (154), Expect = 7e-28 Identities = 157/210 (75%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 194931 AACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTC 194990 ||| ||||| || |||||||| || || || ||||| || | || || | |||||||| Sbjct 56567 AACGAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCCGAGAGGGTGCGGCCATCTTC 56626 Query 194991 GAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTG 195050 |||||||||||| |||||||| ||||| || || || || || |||||||| ||||| || Sbjct 56627 GAGCTGCTTACCAGCGAAGATGAGTCGCTGCTGATCGGGTGGGATGCCTTCCTTGTCCTG 56686 Query 195051 AATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTT 195110 ||| || |||||| || || ||||||||||| || || || ||||| | ||||| Sbjct 56687 AATCTTGGCCTTGACATTGTCGATGGTGTCCGAGGACTCAACCTCGAGGGTGATGGTCTT 56746 Query 195111 TCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || || | || || || || | ||||| Sbjct 56747 GCCGGTGAGGGTCTTGACAAAGATCTGCAT 56776 >seq52 Length=95535 Score = 143 bits (158), Expect = 6e-29 Identities = 157/209 (75%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 || |||||||| ||||| || || || || ||||| || | || || | ||||||||| Sbjct 17641 ACGAGGTGAAGGGTGGATTCCTTCTGGATGTTGTAGTCCGAGAGGGTACGACCATCTTCG 17700 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 ||||||||||| |||||||| || || || || || || ||||| ||||| ||||| || Sbjct 17701 AGCTGCTTACCGGCGAAGATGAGACGCTGCTGATCAGGGGGAATACCTTCCTTGTCCTGG 17760 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTT 195111 || || ||||||||| || |||||||||||| || || || ||||| | ||||| Sbjct 17761 ATCTTGGCCTTGACGTTGTCGATGGTGTCCGAAGACTCGACCTCGAGGGTGATGGTCTTA 17820 Query 195112 CCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || || | ||||| || || | ||||| Sbjct 17821 CCCGTGAGGGTTTTAACAAAGATCTGCAT 17849 >seq23 Length=140287 Score = 143 bits (158), Expect = 6e-29 Identities = 154/204 (75%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 194937 GTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTG 194996 ||| || || ||||| ||||| || ||||| || | |||||||| ||||| || ||||| Sbjct 1752 GTGCAGGGTCGACTCCTTTTGGATGTTGTAGTCCGAAAGAGTTCGTCCATCCTCAAGCTG 1693 Query 194997 CTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTT 195056 ||| || || || || || || || || || ||||| || || || ||||| ||||| || Sbjct 1692 CTTTCCGGCAAAAATGAGACGCTGCTGATCGGGAGGGATCCCCTCCTTGTCCTGAATCTT 1633 Query 195057 TTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGT 195116 ||||||||| ||||||||||| ||| || || || ||||| | ||||| || || Sbjct 1632 GGCCTTGACGTTGTCAATGGTGTCGGAAGACTCAACCTCGAGGGTGATGGTCTTACCGGT 1573 Query 195117 CAAAGTTTTTACGAACACTTGCAT 195140 || ||| |||||||| | ||||| Sbjct 1572 CAGAGTCTTTACGAAGATCTGCAT 1549 Score = 141 bits (156), Expect = 2e-28 Identities = 159/213 (75%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 194928 CAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATC 194987 |||||| ||||| | ||| ||| || |||||||||||||| | ||||||| ||||| Sbjct 2445 CAAAACTAGGTGCAAGGTGCTCTCCTTCTGAATATTGTAATCAGACAGAGTTCGTCCATC 2386 Query 194988 TTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTC 195047 || | ||| ||||| || ||||| | || || ||||| |||||||| ||||| ||||| Sbjct 2385 CTCCAACTGTTTACCAGCAAAGATCAAACGCTGCTGGTCGGGAGGAATACCTTCCTTGTC 2326 Query 195048 TTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGT 195107 ||||| || ||||| || |||||||||||||| || ||||| || || || | ||| Sbjct 2325 CTGAATCTTGGCTTTGACATTGTCAATGGTGTCCGAGCTCTCCACCTCGAGTGTGATCGT 2266 Query 195108 CTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || || || | || || || || | ||||| Sbjct 2265 TTTGCCAGTAAGCGTCTTGACAAAGATCTGCAT 2233 Score = 129 bits (142), Expect = 1e-24 Identities = 143/191 (75%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 194950 TCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTGCTTACCTGCGAAG 195009 || || || || ||||| || | || |||| || |||||||||||||| || || ||| Sbjct 1967 TCCTTCTGGATGTTGTAGTCCGAGAGGGTTCGGCCGTCTTCGAGCTGCTTTCCAGCAAAG 1908 Query 195010 ATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTTTGCTTGACGTTC 195069 ||||| || || ||||| || ||||||||||| ||||| || || || ||| ||||| Sbjct 1907 ATAAGACGCTGCTGGTCAGGGGGAATGCCTTCCTTGTCCTGGATCTTGGCCTTAACGTTG 1848 Query 195070 TCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTCAAAGTTTTTACG 195129 || || |||||||| || ||||| || |||| ||||| || ||||| || || ||| Sbjct 1847 TCGATAGTGTCCGAGGACTCGACTTCGAGCGTAATGGTCTTGCCGGTCAAGGTCTTGACG 1788 Query 195130 AACACTTGCAT 195140 || | ||||| Sbjct 1787 AAAATCTGCAT 1777 Score = 129 bits (142), Expect = 1e-24 Identities = 158/216 (73%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 194925 TCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCC 194984 || ||| |||||||| | ||| || || ||||| |||||||| | ||| || | || Sbjct 2220 TCGCAAGACAAGGTGCAAGGTGCTTTCCTTCTGAATGTTGTAATCCGAAAGGGTGCGACC 2161 Query 194985 ATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTT 195044 ||||| | ||||||||| || ||||| |||||||| || || |||||||| || || || Sbjct 2160 GTCTTCCAACTGCTTACCAGCAAAGATGAGTCGTTGCTGATCGGGAGGAATACCCTCCTT 2101 Query 195045 GTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAAC 195104 || || || || |||||| || || || ||||||||| || ||||| | || | Sbjct 2100 ATCCTGGATCTTGGCCTTGACATTGTCGATCGTGTCCGAAGACTCGACTTCCAAAGTGAT 2041 Query 195105 CGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 ||||||||||| | || || || || | |||||| Sbjct 2040 GGTCTTTCCTGTGAGCGTCTTGACAAAGATTTGCAT 2005 >seq100 Length=67640 Score = 125 bits (138), Expect = 2e-23 Identities = 138/184 (75%), Gaps = 0/184 (0%) Strand=Plus/Minus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 || ||||| || || ||||| || || || ||||| || | || || | || || ||| Sbjct 61187 ACGAGGTGGAGGGTAGACTCCTTCTGGATGTTGTAGTCCGAGAGGGTGCGGCCGTCCTCG 61128 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 ||||||||||| |||||||| || || || ||||| || || || || || ||||| || Sbjct 61127 AGCTGCTTACCGGCGAAGATGAGACGCTGCTGGTCGGGGGGGATACCCTCCTTGTCCTGG 61068 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTT 195111 || || ||||||||| || |||||||| ||| ||||| |||||||| | ||||| Sbjct 61067 ATCTTGGCCTTGACGTTGTCGATGGTGTCGGAAGACTCCACCTCAAGGGTGATGGTCTTA 61008 Query 195112 CCTG 195115 |||| Sbjct 61007 CCTG 61004 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1109287405701987