Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilago_20xerochloae_20[genbank_20GCA_5F001736075.1_202016-09-20] 13,661 sequences; 24,230,715 total letters Query= NC_015398.1 Length=101487 Score E Sequences producing significant alignments: (Bits) Value seq23 125 5e-24 seq53 113 3e-20 seq52 104 2e-17 >seq23 Length=140287 Score = 125 bits (138), Expect = 5e-24 Identities = 153/209 (73%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 34773 ACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCC 34832 |||||||| | || || || || ||||| ||||||||||| ||||| |||| || Sbjct 1757 ACCAAGTGCAGGGTCGACTCCTTTTGGATGTTGTAGTCCGAAAGAGTTCGTCCATCCTCA 1698 Query 34833 AGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTA 34892 ||||| ||||||||||| || || || ||||| || | || | |||||||||||| | Sbjct 1697 AGCTGCTTTCCGGCAAAAATGAGACGCTGCTGATCGGGAGGGATCCCCTCCTTGTCCTGA 1638 Query 34893 ATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTT 34952 ||||| |||||| | || | || | |||||| |||| ||| ||||| || Sbjct 1637 ATCTTGGCCTTGACGTTGTCAATGGTGTCGGAAGACTCAACCTCGAGGGTGATGGTCTTA 1578 Query 34953 CCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 || || |||||||| || ||||||||||| Sbjct 1577 CCGGTCAGAGTCTTTACGAAGATCTGCAT 1549 Score = 114 bits (126), Expect = 8e-21 Identities = 167/232 (72%), Gaps = 8/232 (3%) Strand=Plus/Minus Query 34755 CCTCCCCTCAACCTCAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAA 34814 || || | ||| | ||| || | ||| | |||||||| ||||||||||| || |||||| Sbjct 2231 CCACCTCGCAATCGCAAGACAAGGTGCAAGGTGCTTTCCTTCTGAATGTTGTAATCCGAA 2172 Query 34815 AGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGC 34874 ||| | || | || |||| ||| || || ||||| || ||||||||||| || | || Sbjct 2171 AGGGTGCGACCGTCTTCCAACTGCTTACCAGCAAAGATGAGTCGTTGCTGATCGGGAGGA 2112 Query 34875 ACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATGCTATCGAT--TCACCG--GCCTC 34930 | |||||||| || ||||| ||||| || | ||||| | ||| | ||| Sbjct 2111 ATACCCTCCTTATCCTGGATCTTGGCCTTGAC--AT--TGTCGATCGTGTCCGAAGACTC 2056 Query 34931 AACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCATA 34982 || || | || ||||| ||||| ||||| ||||| |||||||| |||||| Sbjct 2055 GACTTCCAAAGTGATGGTCTTTCCTGTGAGCGTCTTGACAAAGATTTGCATA 2004 Score = 107 bits (118), Expect = 1e-18 Identities = 158/218 (72%), Gaps = 8/218 (4%) Strand=Plus/Minus Query 34769 CAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATC 34828 |||||| | ||| | ||||| || |||||||| || || || || || ||||| |||| Sbjct 2445 CAAAACTAGGTGCAAGGTGCTCTCCTTCTGAATATTGTAATCAGACAGAGTTCGTCCATC 2386 Query 34829 ATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTC 34888 |||| |||||| || ||||| || | || |||||||| | || | || |||||||| Sbjct 2385 CTCCAACTGTTTACCAGCAAAGATCAAACGCTGCTGGTCGGGAGGAATACCTTCCTTGTC 2326 Query 34889 GCTAATCTTCTGTTTGACGGATGCTATCGAT--TCACCG-GC-CTCAACATCGACGGTTA 34944 |||||| |||||| || | || || | ||| || ||| || |||| || | Sbjct 2325 CTGAATCTTGGCTTTGAC--AT--TGTCAATGGTGTCCGAGCTCTCCACCTCGAGTGTGA 2270 Query 34945 TGGTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCATA 34982 | ||||| || || || ||||| ||||||||||||||| Sbjct 2269 TCGTTTTGCCAGTAAGCGTCTTGACAAAGATCTGCATA 2232 >seq53 Length=94643 Score = 113 bits (124), Expect = 3e-20 Identities = 140/192 (73%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 || ||||||||||| ||||| |||||| | || |||| || ||||| || || ||||| Sbjct 56358 TCCTTCTGAATGTTGTAGTCGGAAAGGGTACGGCCATCTTCAAGCTGCTTGCCTGCAAAG 56417 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || || || |||||||| | || | ||||||||||| |||||| |||||| Sbjct 56418 ATAAGACGCTGCTGGTCAGGAGGAATGCCCTCCTTGTCCTGAATCTTGGCCTTGACGTTG 56477 Query 34911 GCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACA 34970 | || | || || ||| || |||| || ||||| || || || | |||||| ||| Sbjct 56478 TCGATAGTGTCCGAGGACTCGACTTCGAGCGTAATGGTCTTGCCGGTCAAAGTCTTGACA 56537 Query 34971 AAGATCTGCATA 34982 |||||||||||| Sbjct 56538 AAGATCTGCATA 56549 Score = 107 bits (118), Expect = 1e-18 Identities = 142/195 (73%), Gaps = 8/195 (4%) Strand=Plus/Plus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 || ||||| ||||| |||||||| ||| | || |||| || ||||| || || || || Sbjct 56586 TCCTTCTGGATGTTGTAGTCCGAGAGGGTGCGGCCATCTTCGAGCTGCTTACCAGCGAAG 56645 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || ||||| ||||| || | || | || |||||||| |||||| ||||| || Sbjct 56646 ATGAGTCGCTGCTGATCGGGTGGGATGCCTTCCTTGTCCTGAATCTTGGCCTTGAC--AT 56703 Query 34911 GCTATCGAT----TCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTT 34966 | ||||| || || |||||| |||| ||| ||||| || || ||||| ||||| Sbjct 56704 --TGTCGATGGTGTCCGAGGACTCAACCTCGAGGGTGATGGTCTTGCCGGTGAGGGTCTT 56761 Query 34967 CACAAAGATCTGCAT 34981 |||||||||||||| Sbjct 56762 GACAAAGATCTGCAT 56776 >seq52 Length=95535 Score = 104 bits (114), Expect = 2e-17 Identities = 151/211 (72%), Gaps = 8/211 (4%) Strand=Plus/Plus Query 34778 GTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTG 34837 ||||| ||| ||| ||||| ||||| |||||||| ||| | || |||| || ||||| Sbjct 17646 GTGAAGGGTGGATTCCTTCTGGATGTTGTAGTCCGAGAGGGTACGACCATCTTCGAGCTG 17705 Query 34838 TTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTT 34897 || ||||| || || || || ||||| || | || | || |||||||| ||||| Sbjct 17706 CTTACCGGCGAAGATGAGACGCTGCTGATCAGGGGGAATACCTTCCTTGTCCTGGATCTT 17765 Query 34898 CTGTTTGACGGATGCTATCGAT--TCACCG--GCCTCAACATCGACGGTTATGGTTTTTC 34953 |||||| | ||||| | ||| | ||| || |||| ||| ||||| || | Sbjct 17766 GGCCTTGACGT----TGTCGATGGTGTCCGAAGACTCGACCTCGAGGGTGATGGTCTTAC 17821 Query 34954 CCGTGAGAGTCTTCACAAAGATCTGCATATT 34984 ||||||| || || |||||||||||||| || Sbjct 17822 CCGTGAGGGTTTTAACAAAGATCTGCATCTT 17852 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 324579550636008