Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilago_20xerochloae_20[genbank_20GCA_5F001736075.1_202016-09-20] 13,661 sequences; 24,230,715 total letters Query= NC_016072.1 Length=1259197 Score E Sequences producing significant alignments: (Bits) Value seq59 116 3e-20 seq23 91.5 1e-12 >seq59 Length=91690 Score = 116 bits (128), Expect = 3e-20 Identities = 383/592 (65%), Gaps = 4/592 (1%) Strand=Plus/Plus Query 549992 GCTATAGGTATAGATTTAGGAACCACATATAGTTGTGTTGGTGTTTGGCAAAATGGTAAA 550051 || || ||||| ||| | || || || || ||||| | |||||||||||| | Sbjct 59080 GCCATCGGTATCGATCTCGGTACTACCTACTCCTGTGTCGCTGTTTGGCAAAACGACCGT 59139 Query 550052 GTTGAAATTATTGCCAATGATCAAGGTAACAGAACTACTCCATCTTATGTTTCTTTCACG 550111 || || | |||||||| || || |||||| | ||||| || || ||||| | ||||| Sbjct 59140 GTCGAGGTCATTGCCAACGACCAGGGTAACCGCACTACCCCTTCATATGTCGCCTTCACC 59199 Query 550112 GAAACTGAACATTTAGTTGGTGATGCAGCAAAATATCAAGCCACTGGTAATCCTACCAAT 550171 || | || | | | | |||||||| || || | || | | || || ||| ||| Sbjct 59200 GACTCGGAGCGTCTCATCGGTGATGCTGCCAAGAACCAGGTCGCTATGAACCCTCACAAC 59259 Query 550172 ACTATTTTTGATGCTAAACGTTTAATTGGAAGAAGTTTTAATGATTCGACTGTTCAGGCA 550231 ||| | || |||||||| ||||| ||||| | | || | || | |||||| | Sbjct 59260 ACTGTCTTCGATGCTAAGCGTTTGATTGGCCGCAAGTTCGACGACGCTGAGGTTCAGTCC 59319 Query 550232 GATATGAAGCATTGGCCTTTCCAAATTGTTAATGTTTCTGGAAAACCTTATAT-TGAAGC 550290 || |||||||| ||||||||| | | || || | || || || | || | | | Sbjct 59320 GACATGAAGCACTGGCCTTTCGAGGTCGTCAACACCGCCGGCAAGCCCCAGATCCGCATC 59379 Query 550291 TACTCATGAAGGATCTGTTAAACA-ATTTTCACCAGAACAAATTTCATCTATGGTTTTAA 550349 | | |||| | | || | || | || ||| | || || || |||||| | Sbjct 59380 GAGT--ACAAGGGTGAGAAGAAGACCTTCACTCCCGAAGAGATCTCTTCCATGGTTCTCC 59437 Query 550350 TGAAAATGAAACAAACAGCCAGTGCTTTTGTTGGTCAAGAAGTTACGGATGCAGTAATAA 550409 | || ||| | || || |||| | ||| |||| ||| || || | | Sbjct 59438 TCAAGATGCGTGAGACCGCTGAGGCTTACCTCGGTGGCACCGTTAAGGACGCCGTCGTCA 59497 Query 550410 CTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATGCTGGACGTATTG 550469 |||| || || || || || ||||| || ||||| ||||| || ||||| || ||| Sbjct 59498 CTGTCCCCGCTTACTTCAACGACTCTCAGCGTCAGGCTACCAAGGATGCCGGTATCATTT 59557 Query 550470 CTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCACTTGCATATGGAC 550529 | || || || ||| | ||||| ||||| || || |||||||| || | || || || | Sbjct 59558 CGGGTCTCAACGTTATGCGTATCATCAACGAGCCCACTGCTGCCGCCATCGCTTACGGTC 59617 Query 550530 TTGATAAACATAATGATCAAGAACTTAATGTACTCATCTTTGATTGTGGAGG 550581 |||| || | | ||| || ||||| |||||||| ||| |||||| Sbjct 59618 TTGACAAGAAGACTGAGGGTGAGAAGAATGTCCTCATCTTCGATCTTGGAGG 59669 >seq23 Length=140287 Score = 91.5 bits (100), Expect = 1e-12 Identities = 156/222 (70%), Gaps = 6/222 (3%) Strand=Plus/Minus Query 563256 GAGACGGAGTACAAGATGAAGGGT--ACTTTCTTTGGTAATATTGTAATCAGCTAGAGTT 563313 ||||||||| || | || ||||| ||| ||||| || ||||| || | |||||| Sbjct 1767 GAGACGGAGGACCAAGTGCAGGGTCGACTCCTTTTGG--ATGTTGTAGTCCGAAAGAGTT 1710 Query 563314 CTTGAATCTTCAAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCT 563373 | | ||| ||||| || |||||||||||||| || | |||||||| ||||| || || Sbjct 1709 CGTCCATCCTCAAGCTGCTTTCCGGCAAAAATGAGACGCTGCTGATCGGGAGGGATCCCC 1650 Query 563374 TCTTTATCTTGAATTTTTTGTTTTACTGCCTCAATTGTATCAGTGTGAGT-ACATTCGAG 563432 || || || ||||| || || || ||||| || || | || | | ||||| Sbjct 1649 TCCTTGTCCTGAATCTTGGCCTTGACGTTGTCAATGGTGTC-GGAAGACTCAACCTCGAG 1591 Query 563433 AGTAACAGTTTTACCAGTAAGAGTTTTAACGAAAATTTGCAT 563474 || | || ||||| || ||||| || ||||| || ||||| Sbjct 1590 GGTGATGGTCTTACCGGTCAGAGTCTTTACGAAGATCTGCAT 1549 Score = 87.8 bits (96), Expect = 1e-11 Identities = 153/220 (70%), Gaps = 2/220 (1%) Strand=Plus/Minus Query 563257 AGACGGAGTACAAGATGAAGGGTACTTTCTTTGGTAATATTGTAATCAGCTAGAGTTCTT 563316 ||||| | || || || | ||| || || || |||||||||||||| ||||||| | Sbjct 2450 AGACGCAAAACTAGGTGCAAGGTGCTCTCCTTCTGAATATTGTAATCAGACAGAGTTCGT 2391 Query 563317 GAATCTTCAAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTTCT 563376 ||| || | ||||| || ||||| || | | ||||| || |||||||| ||||| Sbjct 2390 CCATCCTCCAACTGTTTACCAGCAAAGATCAAACGCTGCTGGTCGGGAGGAATACCTTCC 2331 Query 563377 TTATCTTGAATTTTTTGTTTTACTGCCTCAATTGTATCAGTG-TGAGTACATTCGAGAGT 563435 || || ||||| || ||| || ||||| || || | | | || ||||| || Sbjct 2330 TTGTCCTGAATCTTGGCTTTGACATTGTCAATGGTGTCCGAGCTCTCCAC-CTCGAGTGT 2272 Query 563436 AACAGTTTTACCAGTAAGAGTTTTAACGAAAATTTGCATA 563475 | ||||| |||||||| || || || || || |||||| Sbjct 2271 GATCGTTTTGCCAGTAAGCGTCTTGACAAAGATCTGCATA 2232 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 4028573544708890