Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilago_20xerochloae_20[genbank_20GCA_5F001736075.1_202016-09-20] 13,661 sequences; 24,230,715 total letters Query= NC_019491.1 Length=291144 Score E Sequences producing significant alignments: (Bits) Value seq36 289 5e-73 seq67 214 3e-50 >seq36 Length=116313 Score = 289 bits (320), Expect = 5e-73 Identities = 1159/1796 (65%), Gaps = 73/1796 (4%) Strand=Plus/Plus Query 212696 GTTCAGGGACTGACTCTGGTCTATGAATGGGGCCCTGTCAGCGGCCATGTCTATGATATC 212755 ||| ||||| ||| |||| ||||| | | | |||||||||||||| |||||| | Sbjct 37648 GTTGAGGGATTGAGACTGGCAAATGAAAGCACCTCGATCAGCGGCCATGTCGATGATAGC 37707 Query 212756 TCTCTGGGAGAGCTCCCACACGGTCTTGAAGATTTCTTTGAGGTCCTCTGGGAAGCCGGG 212815 ||||||||| |||||| || |||||| ||| | |||| || || | || || Sbjct 37708 CTTCTGGGAGATCTCCCAAACAGTCTTGTAGAGCTTCTTGATACGGTCAGGAATACCAGG 37767 Query 212816 GATGTTCTGCACAGACCCCCTGTGTATGGTCAGCTGCAGGCGCATGTCCTCGTTCCAGAG 212875 | |||||| | || || | ||| | | | | |||| |||||||| | Sbjct 37768 AACGTTCTGGATGGAACCACCGTGAGCGATAATACGGTTCTTCATGGTGTCGTTCCACAA 37827 Query 212876 GCCCCTGGTCTCCAGGCACTT----GACCAGGTGAGGGTTGACTATCTGGAAGTCACCTG 212931 || || ||| | | | || || || ||||||||| | |||||| ||||| | Sbjct 37828 TCCT-TG--CTCGACG-AGTTCGCGGAGCAACCAAGGGTTGACGACCTGGAATTCACCAG 37883 Query 212932 AGAGCACCCTCCTCTGGTAAAAGTTTGAAGTGTAGGGCTCGATGCTCTCGTTGTTCCCCA 212991 || || | | ||| | ||| || ||||||||||||| || |||||| |||| Sbjct 37884 CAAGGACACGACGAGAGTAGATGTTGGAGGTGTAGGGCTCGAAGCATTCGTTGAAACCCA 37943 Query 212992 GAATCTGTGCAGTGCTGGCTGTGGGCATGGGAGCCACCAGGAGACTGTTCCTCACTCCGT 213051 ||||| ||| || || ||||||||||| | || ||| ||| | | |||| Sbjct 37944 AGATCTGACTTGTGGATGCGGTAGGCATGGGAGCGAGCAAGAGCGAGTTGCGAAGACCGT 38003 Query 213052 GCTCGCCGATGAGGCGCCGAAGCTCTGCCCAGTCCCATCTGCCAGACAGGTCCTCGTCCT 213111 ||| | |||| | | ||| ||||||||||| | || || Sbjct 38004 GCTTGGCGATCTTGGCCTTGAGCGAAGCCCAGTCCCAAAGATCGGAAGGGG--------- 38054 Query 213112 TCACGTTCCACATGTCAAACTGCAAGATGCCTTTGCTCACGGGGCTGCCCTGGTAAGAGG 213171 | || ||||||||| |||| | || | | | ||| || ||| | Sbjct 38055 TAACACCCCACATGTCGTACTGGAGTTCACCCTGGGAGGCAGGGGAACCGGCGTAGGTCT 38114 Query 213172 AGTAGGGGCCATGCTCCTTGGCCAGCTCGCAGGACGCCTGCAGGGCAGCGTAGTAGATGG 213231 ||||| ||||||||||| ||||| |||||| || || || || |||| |||||||| Sbjct 38115 CGTAGGTGCCATGCTCCTGGGCCAACTCGCACGATCGCTCGAGAGCGGCGTGGTAGATGG 38174 Query 213232 TTTCAAATATCTCCCTGTTGA-GCTTCTTGGCCTCTGGGGACGTGAAGGGCATCATC-AT 213289 | || || |||| ||| | || | | |||| || ||| | || ||| | | | || Sbjct 38175 TCTCGAAGATCTGGACGTTCAAGCGACGAG-CCTCGGGCGAC-TCAAAGGCGTAACCCAT 38232 Query 213290 GCGTTGGAACACATCAGCCAGCCCCTGGACCCCGATGCCGATGGGTCTGTGTCTCAGGTT 213349 | ||| |||| || || |||||||| ||||| || ||||| | ||| | || ||| Sbjct 38233 GATCATGAAGGCATCGGCGAGACCCTGGACACCGATACCAATGGGGCGGTGACGCATGTT 38292 Query 213350 AGA-CTTGGAGCACTCCTCCAAGGGGTAAAAGTTGCAGTCGATGATCTTGTTGAGGTT-- 213406 ||| | |||| |||||| | ||||| ||||| |||||||| ||||| | ||| Sbjct 38293 AGAACGACGAGC-CTCCTCAACAGGGTAGTAGTTGATATCGATGATTTTGTTCAAGTTCT 38351 Query 213407 -GCGGGTGGCCACTTTGGTGACATGGGCCAGGTACTCGTGATTGAACACGTAGCCCC--- 213462 || | | ||| |||| || | | || || | ||||| ||||| || Sbjct 38352 TGCAGATAGCC---TTGGCAACCTCGTGCAA--ACGC----TTGAAGTCGTAGACCTTGG 38402 Query 213463 ---CGTCCTGCACAAACTCAGGCAGGGCGATGCTGGCCAGGTTGCAAACGGCCACCTCCT 213519 || | | || || || |||||| ||| ||||||||||| || ||||| | Sbjct 38403 TAACGGGGTCGATGAAGGTGGGAAGAGCGATGGAGGCAAGGTTGCAAACAGCAACCTCAT 38462 Query 213520 -GAGAGTCTGTGTACTCCATGATCTCGGTGCACAGGTTGCTGCATCGGATGGTGCCCAGG 213578 | ||| | ||||||| |||||||| ||||||| |||| ||| ||| || || ||| Sbjct 38463 CGGGAG-CACTGTACTCGATGATCTCAGTGCACAAGTTGGAGCACTTGATAGTACCGAGG 38521 Query 213579 TTCTGGTGGTTTGACTTTGCGTTGGCAGAATCCTTGTAGAGCATGTAGGGGGACCCGGTC 213638 |||| ||||| ||||| |||||||| ||||||||||| ||| ||||| |||||| Sbjct 38522 TTCTTCTGGTTGGACTTGCGGTTGGCAGCGTCCTTGTAGAGGATGAAGGGGTTACCGGTC 38581 Query 213639 TCTAGCTGGGACACCAGTATCTGGCTCCAGAGGTACCTGGCCTTGACCACCCGCCTGACA 213698 || ||| ||| | || || | |||||| | | |||||||| ||| | | Sbjct 38582 TCGGTCTGCGACTCGAGGATGGCGTACCAGAGCTTCTGAGCCTTGACGGTGCGCTTTG-A 38640 Query 213699 GCTCCGGGCGTAGCCTCGTACTGTTCGTAGAGCTCGTTGAATTCGTGGCCCCAGACCCTG 213758 || | || |||||||| | |||||||| | ||| || | || || | Sbjct 38641 GCGACCTTCG--GCCTCGTAACGCTCGTAGAGACGCTCGAACTCTTCACCGTAGCAGTCG 38698 Query 213759 TCCAGTCCCGGACAGGATGCGGGACACATGAGGCTCCAGTCCCCGTCAT-CTCTGACTCT 213817 | || || || || ||| |||||||| ||| || |||| | ||| || || Sbjct 38699 GCAAGACCGGGGCACTCGTTGGGGCACATGAGCGACCAATCACCGTTCTGCTCA-ACCCT 38757 Query 213818 CTGCATGAACAGGTCCGGGACCCACAGCGCGGTGAACAGGTCCCTGGTCCTCCTCTCGTC 213877 || |||||| || || || ||||| || ||| ||| || || | || | || || Sbjct 38758 CTTCATGAAGAGATCGGGAACCCAGAGAGCGTAGAAGAGTTCACGGGCACGAACTTCTTC 38817 Query 213878 CACTCCAGAGTTTTTGCGCAGATCTAGAAAGTCAAAGATGTCCGCGTGCCACGGCTCCAT 213937 | || ||| ||||||| || || || ||||||| |||| |||||| ||||| || Sbjct 38818 CTTACCGTGGTTCTTGCGCAAGTCGAGGAACTCAAAGACATCCGAGTGCCAAGGCTCAAT 38877 Query 213938 GTAGATGGCAAAGGCGCCCGGCCTCTTG---CCGCCCTGGTCCACCAGCCTGGCCACCAT 213994 ||||||||||||||| || || | |||| || |||||||| || | ||| | Sbjct 38878 GTAGATGGCAAAGGCACCGGGACGCTTGTTACCACCCTGGTCGACGTAACGGGCGGTGTT 38937 Query 213995 GTTGAAGATGCGCAGGACGGGTACCAGCCCGTTG--GACTGTCCGTTGGTTCCCGCTATA 214052 |||||||| || || | ||| || | |||||| ||| |||||||| || || || Sbjct 38938 GTTGAAGACACGAAGCATGGGAACGATACCGTTGCTGAC--ACCGTTGGTGCCGGCAATG 38995 Query 214053 TACGAGCCGGAGGCCCTC--AGGTTGCTCATGGAGAGCCCTATGCCACCGGCGTACTTGG 214110 || ||||| || |||| | | | ||| | || |||||||||||| ||||| Sbjct 38996 TAGGAGCC--AGTACCTCGAATGCAGTGAATGTTCAAACCAATGCCACCGGCGGTCTTGG 39053 Query 214111 AGATCATGGCGCAGCGCCTCACAGTCTCCATGATGCCGGCCATGCTGTCATCTGTGAGGT 214170 |||||||||| ||| | | | || || |||||| | || |||||| | | | Sbjct 39054 AGATCATGGCACAGGTCTTGAGGGTGTCGTAAATGCCGTCGATCGAGTCATCCTTCATGG 39113 Query 214171 TCAGCAAGAAGCAGCTCGAGAGCTGGGGCCTGGACGAGCCAGAGTTGAAAAGCGTGGGGC 214230 | | | ||| ||| ||||||||| || || | |||| |||||| || || || Sbjct 39114 TAACAAGGAAACAGGACGAGAGCTGTGGGTGGGGAGTACCAGCGTTGAAGAGGGTTGGCG 39173 Query 214231 TGGCATGGATCATAAACTTGTTAGAGAGGAGCCTGTAGGTCTCCAGGACTGAGGGGATGT 214290 ||| || | | |||| | || | ||| |||| ||||| | | | ||||| Sbjct 39174 AGGCGTGAGTAAAGTACTTTTGCGACATGAGGTTGTACGTCTCGATGGCGCTCTCGATGT 39233 Query 214291 CGTGCTTGTGGATCTGTAGAGCGCACCTCATCAGCATGTGCTGGGGCCTCTCTATGGGTC 214350 | || ||| || | ||| | ||| |||||||||||||| | ||| | | Sbjct 39234 CCTGGCCGTGAATACCAACAGCAACACGCATGAGCATGTGCTGGGGACGCTC--AGCAAC 39291 Query 214351 CTTTGGGGCCCTT------GAGCAGGTAGGAGCGCTCCAGAGTCTTGAACCCAAAGTAGG 214404 ||| ||| || ||||| |||||| ||||| ||||||||||| || ||| || Sbjct 39292 CTT----GCCGTTGATGCGGAGCAAGTAGGAACGCTCGAGAGTCTTGAAGCCGAAGAAGT 39347 Query 214405 AGTAG-GTATGATCGTTCCCGTGTATGAGGGCAGCGTCCAGCTCTTCCGCGTGCTC 214459 |||| | | | ||| | ||| |||| || | ||| |||| ||| |||||| Sbjct 39348 TGTAGTGGAAG-TCGCGCTCGTAGATGATAGCCGAGTCAAGCTGGTCCTTGTGCTC 39402 >seq67 Length=86059 Score = 214 bits (236), Expect = 3e-50 Identities = 489/729 (67%), Gaps = 28/729 (4%) Strand=Plus/Plus Query 47961 GATCCGCGACGTACTCGATGTATTTTGACATGAGGGTGATGTTCATGCCTATGAGGGACA 48020 |||| |||| || ||||||||| ||||| || | ||||||||||| ||||| || Sbjct 4469 GATCACCGACATATTCGATGTATGAAGACATCAGCGAAATGTTCATGCCGATGAGAGAAC 4528 Query 48021 CGGGCAAAGCCTTTGTGAGAAACTCCTTCTCTATCTGCACGGCTTCCCCCACAATCTGCT 48080 || | |||| | |||| ||||| ||||| || | || || || | | || | Sbjct 4529 ATGGTAGAGCCGTGCTGAGGAACTCTTTCTCGATTTCGACTGCCTCGGCGATGATTTTGA 4588 Query 48081 TAACG-----CGGGACTCTGAGGGTTTGTTGCGCAGGTGCTTGGCATAGAGCATGCAGGC 48135 ||| |||| | | | | || ||| ||||| || |||| | |||||| Sbjct 4589 GGACGGTATCCGGG--TGCGCGCGCTTCTTG---AGGTGACTGA---AGAGGAGGCAGGC 4640 Query 48136 AAAGTCCCTGTGCAAGCCTTCGTCCCGGCTGATGAGCACGTTGGAGAAGCAGAGACCAGG 48195 ||||| |||| | |||||||| || ||||||| ||||||||||| ||| || || Sbjct 4641 GAAGTCGGTGTGAAGACCTTCGTCGCGTGAGATGAGCTCGTTGGAGAAGGTGAGTCCGGG 4700 Query 48196 CATGACCCCCCTCTGTTTGAGCCAGAAAATTGCCGCGAAAGAGCCAGAGAAGAAGATGCC 48255 ||| | || | || ||||||||||| || | ||||| ||||| ||||||||||| || Sbjct 4701 CATAAGACCACGCTTCTTGAGCCAGAAGATGGAGGCGAAGGAGCCGGAGAAGAAGATACC 4760 Query 48256 CTCCACTGCCGCGAACGCGGTGAGCCTCTCTCCGAAAGAAGCGTTCTTGTCTGAGATCCA 48315 ||| ||||| || || || ||| | || |||| | || || ||| |||||| Sbjct 4761 CTCAACTGCGGCAAAGGCAACGAGACGTTCGGCGAAGGTGGCTTTGCGGTCGCTGATCCA 4820 Query 48316 GGAAAGCGCCCAGTCTGCCTTCTTCTTGATGCATGGCATCGTCTCTATGGCCCGGAAGAG 48375 ||| |||||||| ||||||| ||||| | || || ||||| | ||| ||||| Sbjct 4821 ACGAAGAGCCCAGTCGGCCTTCTGCTTGACGACGGGGATGGTCTCGACGGCGTCAAAGAG 4880 Query 48376 --CTTCTTGC-ACTCACCTGCGTCCGCAACATAGGT---AGTGAGCAGCTTTGCGTACAT 48429 |||| || |||| | || || ||||| |||| ||| | ||| | Sbjct 4881 GAATTCTCGCTGCTCA---GGCTCACGAATGTAGGTGTCGATGAGGAGC---GAGTAAGT 4934 Query 48430 CTCAGAGTGCACATTCTCTATAGCGATCTGGAACCCGTAGAAGGCCCTGGCCTCAAACAC 48489 ||| ||||| | ||||| || ||||||||| || |||||| | ||||| | Sbjct 4935 CTCGGAGTGAATGTTCTCCATCATGATCTGGAAACCATAGAAGCATCGAGCCTCGGCAGC 4994 Query 48490 CTGCACTTCTGTGGAGAATCTCTCCAGCAGATTCTCATTGACTATCCCATCTGAAGCAGC 48549 ||| ||||| | ||| | ||| | || ||||| ||||| || ||||| |||||||| Sbjct 4995 CTGAACTTCGGAACTGAAACGCTCGACGAGGTTCTCGTTGACGATACCATCGGAAGCAGC 5054 Query 48550 AAAGAAGGCAAGGACATGTTTAAGGAAATGGCGCTCGTTGTGGGTGAGAGCATT---CCA 48606 |||||||| ||||| || | || || |||||||||| | |||| || ||| Sbjct 5055 GAAGAAGGCGAGGACGTGGGAGATAAAGTGACGCTCGTTGTCGTTGAGCTTGTTGTCCCA 5114 Query 48607 GCCCTGTACGTCTTTGCCCAGGTCCACTTCTTCCACAGTCCAGAAGGACGCGAGTGCTTT 48666 | | || | ||| ||| ||||| | || || | ||||| ||||| || ||| || Sbjct 5115 GTCATGGAGGTCCTTGGAAAGGTCGATCTCCTCGGCGGTCCAAAAGGAAGCCTCTGCCTT 5174 Query 48667 TTTGTACAT 48675 |||||||| Sbjct 5175 CTTGTACAT 5183 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 931373729130240