Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilago_20xerochloae_20[genbank_20GCA_5F001736075.1_202016-09-20] 13,661 sequences; 24,230,715 total letters Query= NC_019495.1 Length=290304 Score E Sequences producing significant alignments: (Bits) Value seq36 226 5e-54 seq67 176 8e-39 >seq36 Length=116313 Score = 226 bits (250), Expect = 5e-54 Identities = 595/897 (66%), Gaps = 17/897 (2%) Strand=Plus/Plus Query 221750 TACTGTATGATCTCTGTACAGAGGTTGCTGCACTTGATGGTCCCCAGGTGATTGTGATTA 221809 |||| |||||||| || || | |||| ||||||||| || || |||| || || || Sbjct 38474 TACTCGATGATCTCAGTGCACAAGTTGGAGCACTTGATAGTACCGAGGTTCTTCTGGTTG 38533 Query 221810 GACTTGCGATTGGCAGCGTCCTTGTAGAGCATAAAGGGACCGCCAGTCTCCAGCTGAGCC 221869 |||||||| |||||||||||||||||||| || ||||| || ||||| ||| | | Sbjct 38534 GACTTGCGGTTGGCAGCGTCCTTGTAGAGGATGAAGGGGTTACCGGTCTCGGTCTGCGAC 38593 Query 221870 ACCAGAATCTTGTCCCAGAGTTCTCTG-GCGCTCACCGTCCTC-TTGACTGCACCCTCGG 221927 | || || || |||||| | |||| || | || || | | |||| | ||| |||| Sbjct 38594 TCGAGGATGGCGTACCAGAGCT-TCTGAGCCTTGACGGTGCGCTTTGAGCG-ACCTTCGG 38651 Query 221928 TCTTTTCATACCCGGTATAGAGCATGTCAAACTTTTCACCGTACGCCTCGTCCAGGCCTG 221987 || | | | || ||||| || |||| ||||||||| ||| | || || | Sbjct 38652 CCTCGTAACGCTCG---TAGAGACGCTCGAACTCTTCACCGTAGCAGTCGGCAAGACCGG 38708 Query 221988 GACACCTGGCGGGACACATCAGACTCCAGTGCTTGTTGTCTTTGACCCTCTGCATGAAGA 222047 | ||| | ||| ||||| || ||| | ||| | | ||||||| |||||||| Sbjct 38709 GGCACTCGTTGGGGCACATGAGCGACCAATCACCGTTCTGCTCAACCCTCTTCATGAAGA 38768 Query 222048 GGTCCGGGATCCACAGCGCCTGAAAGAGATCTCTGGTCCGCTGCTCCTCCACGCCGTTGT 222107 | || || | ||| || || | ||||| || | || || || ||| |||| || Sbjct 38769 GATCGGGAACCCAGAGAGCGTAGAAGAGTTCACGGGCACGAACTTCTTCCTTACCGTGGT 38828 Query 222108 TTTTCCTCAGATCCAAAAACTCAAAAATGTCAGCGTGCCACGGCTCCAGATAGACGGCCA 222167 | || | || || | |||||||| | || | |||||| ||||| | |||| ||| | Sbjct 38829 TCTTGCGCAAGTCGAGGAACTCAAAGACATCCGAGTGCCAAGGCTCAATGTAGATGGCAA 38888 Query 222168 GAGCGCCGGGTCGCTTGTTGCCACCCTGATCCACCATCCTCTCCAGAGCGTTGAAGATGC 222227 || ||||| |||||||| |||||||| || || | | |||||||| | Sbjct 38889 AGGCACCGGGACGCTTGTTACCACCCTGGTCGACGTAACGGGCGGTGTTGTTGAAGACAC 38948 Query 222228 GAAGGGTCGGTACCAGTCCGTTGGATCGACCGTTGGTGCCCTTAATGTACGCACCGCCGG 222287 |||| | || || | |||||| |||||||||||| |||||| | | | | Sbjct 38949 GAAGCATGGGAACGATACCGTTGCTGACACCGTTGGTGCCGGCAATGTAGGAGC--CAGT 39006 Query 222288 CCCTC-AGGTTACTGGCAG-ACATGCCGATACCACCGGCGTGTTTCGAGATCATGGCGCA 222345 |||| | | || | || || || ||||||||| || ||||||||||| || Sbjct 39007 ACCTCGAATGCAGTGAATGTTCAAACCAATGCCACCGGCGGTCTTGGAGATCATGGCACA 39066 Query 222346 GCTCTTGAGAGTGTCCATGATGCCCTCCATAGAGTCCTCCTTGACGTTCAGCAGAAAACA 222405 | ||||||| ||||| ||||| || || ||||| ||||| | | | | || ||||| Sbjct 39067 GGTCTTGAGGGTGTCGTAAATGCCGTCGATCGAGTCATCCTTCATGGTAACAAGGAAACA 39126 Query 222406 AGACGACATCTGAGATTTGGTGGAACAGGCGTTAAACAGCGTGGGACTGGCGTGTGTAAA 222465 ||||| | ||| | | || | || ||||| || || || || |||||| ||||| Sbjct 39127 GGACGAGAGCTGTGGGTGGGGAGTACCAGCGTTGAAGAGGGTTGGCGAGGCGTGAGTAAA 39186 Query 222466 GTAGCCCCTAGACATCAGATCGTACGTCTCTACGACTCTGGCGATGTTGTCCCCGTGAAT 222525 ||| ||||| || | ||||||||| | | | || |||||| | |||||||| Sbjct 39187 GTACTTTTGCGACATGAGGTTGTACGTCTCGATGGCGCTCTCGATGTCCTGGCCGTGAAT 39246 Query 222526 CTGCATGGCGCATCTCATGTACATGTACTGGGGCCTCTCCACAGGACCCTT---GGAGCT 222582 | || | |||| ||||| |||||| | || ||| | |||| | | | Sbjct 39247 ACCAACAGCAACACGCATGAGCATGTGCTGGGGACGCT---CAGCAACCTTGCCGTTGAT 39303 Query 222583 GGAGAGCAGGTACGATTTTTCCAGAGTCTTGAACCCAAAGTAGTTGAGGTCAAAGTC 222639 | ||||| ||| || || ||||||||||| || ||| ||||| || ||||| Sbjct 39304 GCGGAGCAAGTAGGAACGCTCGAGAGTCTTGAAGCCGAAGAAGTTGTAGTGGAAGTC 39360 >seq67 Length=86059 Score = 176 bits (194), Expect = 8e-39 Identities = 437/657 (67%), Gaps = 26/657 (4%) Strand=Plus/Minus Query 25477 ATATGGGAGATGTACAAGAAGGCTCAAAACTCAAACTGGACCGCCGAAGAGATTGATCTG 25536 || ||| | |||||||||||||| | || ||||||||||| ||||| || || Sbjct 5192 ATTTGGCAAATGTACAAGAAGGCAGAGGCTTCCTTTTGGACCGCCGAGGAGATCGACCTT 5133 Query 25537 GCCAAGGACATGGACGGCTGGTAC-----GCTCTATCCAAAGACGAGCAGCATTTTCTCA 25591 |||||||| | | | |||| || |||| | | | |||||| || ||| || Sbjct 5132 TCCAAGGACCTCCATGACTGGGACAACAAGCTCAA--CGACAACGAGCGTCACTTTATCT 5075 Query 25592 AGTACGTGTTGGCATTCTTTGCAGCCTCTGATGGTATAGTGAACGAGAATCTGTGCGAGA 25651 |||| | || ||||| || || || |||||||| || |||||||| || |||| Sbjct 5074 CCCACGTCCTCGCCTTCTTCGCTGCTTCCGATGGTATCGTCAACGAGAACCTCGTCGAGC 5015 Query 25652 GATTCACCAGGGAAGTGCAGTACGTGGAGGCCAAGTGTTTCTACGGTTTCCAGATGGCCA 25711 | |||| ||||| ||| | ||||| || ||||| ||||||||||| | Sbjct 5014 GTTTCAGTTCCGAAGTTCAGGCTGCCGAGGCTCGATGCTTCTATGGTTTCCAGATCATGA 4955 Query 25712 TCGAAAATGTGCACTCTGAGGTGTATGCCAAGCTTCTGATG---ACGTACATTACAGA-- 25766 | || || | ||||| ||| || | ||| || || || |||||| || Sbjct 4954 TGGAGAACATTCACTCCGAGACTTACTC---GCTCCTCATCGACACCTACATTCGTGAGC 4898 Query 25767 CGTCGCCGAGAGAGATCGGCTGTTTGGTGCCATCGAGCACATACCCAGCATCAAGAGGAA 25826 | || | |||| || || |||| ||| ||||| ||| ||| | ||||| ||| Sbjct 4897 CTGAGCAGCGAGAATTC--CTCTTTGACGCCGTCGAGACCATCCCCGTCGTCAAGCAGAA 4840 Query 25827 GGCGCGGTGGGCCATGAAGTGGATCAACAGCCAGAGCGCTACGTTTGGCGAGCGGCTGGT 25886 ||| ||||| | ||||||| | || | || || || | ||| || || || Sbjct 4839 GGCCGACTGGGCTCTTCGTTGGATCAGCGACCGCAAAGCCACCTTCGCCGAACGTCTCGT 4780 Query 25887 AGCCTTTGCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTTTGCGGCCATCTTCTGGCT 25946 |||||||| || || ||||| ||||| ||| ||| || || || ||||||||||||| Sbjct 4779 TGCCTTTGCCGCAGTTGAGGGTATCTTCTTCTCCGGCTCCTTCGCCTCCATCTTCTGGCT 4720 Query 25947 CAAGCAGAAGGGGACCATGCCCGGGCTGTACTTTTCCAACGAGCTCATCAGCAGGGACGA 26006 |||| || || |||||||| || ||| ||||||||||||||| | ||||| Sbjct 4719 CAAGAAGCGTGGTCTTATGCCCGGACTCACCTTCTCCAACGAGCTCATCTCACGCGACGA 4660 Query 26007 GGGTCTCCACAGAGATTTTGCCTGCCTGCTCTACACGGGCCACTTGCTCCACAAACCTTC 26066 ||||| |||| || || |||||||| |||| || | ||| ||| | || | | Sbjct 4659 AGGTCTTCACACCGACTTCGCCTGCCTCCTCTTCA---GTCAC---CTCAAGAAGCGCGC 4606 Query 26067 TCA---AGAGACCGTCTACAGTATCATCAAAGAGGCTGTGGAGATCGAGAAGGAGTT 26120 || || |||||| || |||||| ||||| || || |||||||| ||||| Sbjct 4605 GCACCCGGATACCGTCCTCAAAATCATCGCCGAGGCAGTCGAAATCGAGAAAGAGTT 4549 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 928686188139840