Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilago_20xerochloae_20[genbank_20GCA_5F001736075.1_202016-09-20] 13,661 sequences; 24,230,715 total letters Query= NC_020104.1 Length=1021348 Score E Sequences producing significant alignments: (Bits) Value seq59 136 3e-26 seq23 107 1e-17 seq53 105 4e-17 >seq59 Length=91690 Score = 136 bits (150), Expect = 3e-26 Identities = 392/595 (66%), Gaps = 10/595 (2%) Strand=Plus/Plus Query 474329 GCAATTGGTATTGATTTAGGAACTACTTACAGTTGTGTAGCTGTTTGGCAAAATGGTAAA 474388 || || ||||| ||| | || ||||| ||| ||||| |||||||||||||| | Sbjct 59080 GCCATCGGTATCGATCTCGGTACTACCTACTCCTGTGTCGCTGTTTGGCAAAACGACCGT 59139 Query 474389 GTAGAAATAATTGCCAATGACCAAGGTAATAGAACAACACCATCATATGTTTCTTTTACT 474448 || || | |||||||| ||||| ||||| | || || || |||||||| | || || Sbjct 59140 GTCGAGGTCATTGCCAACGACCAGGGTAACCGCACTACCCCTTCATATGTCGCCTTCACC 59199 Query 474449 GAAACTGAACATCTTATTGGAGATGCTGCTAAATATCAAGCTGCATCTAATCCTGTTAAT 474508 || | || | ||| || || |||||||| || | || | || || ||| || Sbjct 59200 GACTCGGAGCGTCTCATCGGTGATGCTGCCAAGAACCAGGTCGCTATGAACCCTCACAAC 59259 Query 474509 ACTATTTTTGATGCTAAAAGATTGATTGGTCGTAATTTTGATGATACCACTGTCCAATCT 474568 ||| | || |||||||| | |||||||| || || || || || | || || || Sbjct 59260 ACTGTCTTCGATGCTAAGCGTTTGATTGGCCGCAAGTTCGACGACGCTGAGGTTCAGTCC 59319 Query 474569 GATATGCGTCATTGGCCTTTTAAGGTGATAAATGTTGGTGGTAAACCATATAT-AGAAGC 474627 || ||| || |||||||| |||| | || | || || || | || | | | Sbjct 59320 GACATGAAGCACTGGCCTTTCGAGGTCGTCAACACCGCCGGCAAGCCCCAGATCCGCATC 59379 Query 474628 -AATACACGCAGGTGAAACTAAACAATTTTCACCGGAACAAATTTCTTCAATGGTTTTAG 474686 | |||| | ||||| | || || | || ||| | || ||||| |||||| | Sbjct 59380 GAGTACAAG--GGTGAGAAGAAGACCTTCACTCCCGAAGAGATCTCTTCCATGGTTCTCC 59437 Query 474687 CCAAAATGAAACAAACCGC-GAGCTCATATCTTGGACAAGAAGTAACTGATGCAGTAATT 474745 ||| ||| | ||||| ||| | || || || || | || || || | Sbjct 59438 TCAAGATGCGTGAGACCGCTGAG-GCTTACCTCGGTGGCACCGTTAAGGACGCCGTCGTC 59496 Query 474746 ACTGTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACTAAAGATGCGGGAAGAATT 474805 ||||| || || || || || || ||||| ||||| || || || ||||| || | ||| Sbjct 59497 ACTGTCCCCGCTTACTTCAACGACTCTCAGCGTCAGGCTACCAAGGATGCCGGTATCATT 59556 Query 474806 GCAGGTCTTAATGTTTTACGTATTATTAATGAACCAACAGCAGCCGCACTTGCTTATGGT 474865 | ||||| || ||| | ||||| || || || || || || ||||| | ||||| ||| Sbjct 59557 TCGGGTCTCAACGTTATGCGTATCATCAACGAGCCCACTGCTGCCGCCATCGCTTACGGT 59616 Query 474866 CTTGATAAGAATTCTGA--CAAAGAAGTAAATGTTTTAATCTTTGATTGTGGAGG 474918 ||||| ||||| |||| ||||| ||||| | ||||| ||| |||||| Sbjct 59617 CTTGACAAGAAGACTGAGGGTGAGAAG--AATGTCCTCATCTTCGATCTTGGAGG 59669 >seq23 Length=140287 Score = 107 bits (118), Expect = 1e-17 Identities = 155/219 (71%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 480551 ACGAAGACGGAGTACAAGATGAAGTGTACTTTCTTTAGAAACATTATAATCAGCTAGAGT 480610 |||||||||||| || ||||| | || ||||| || | || || || | || || Sbjct 1998 ACGAAGACGGAGGACGAGATGCAAGGTGCTTTCCTTCTGGATGTTGTAGTCCGAGAGGGT 1939 Query 480611 TCTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCC 480670 || | ||||| || |||||||||||||| |||||||| || || ||||| ||||| || Sbjct 1938 TCGGCCGTCTTCGAGCTGCTTTCCAGCAAAGATAAGACGCTGCTGGTCAGGGGGAATGCC 1879 Query 480671 TTCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAGTGTGTGAAGTTTCAAG 480730 ||||||||| || ||||| || || || ||||| || | | ||| || Sbjct 1878 TTCCTTGTCCTGGATCTTGGCCTTAACGTTGTCGATAGTGTCCGAGGACTCGACTTCGAG 1819 Query 480731 GGTAATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 ||||| || || ||||| | ||||| |||||||| || Sbjct 1818 CGTAATGGTCTTGCCGGTCAAGGTCTTGACGAAAATCTG 1780 Score = 87.8 bits (96), Expect = 1e-11 Identities = 153/220 (70%), Gaps = 2/220 (1%) Strand=Plus/Minus Query 480551 ACGAAGACGGAGTACAAGATGAAGTGTACTTTCTTTAGAAACATTATAATCAGCTAGAGT 480610 ||| ||||| | || || || | || || || || || ||| ||||||| ||||| Sbjct 2454 ACGCAGACGCAAAACTAGGTGCAAGGTGCTCTCCTTCTGAATATTGTAATCAGACAGAGT 2395 Query 480611 TCTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCC 480670 || ||| || | || || |||||||| || | ||| || || || |||||||| || Sbjct 2394 TCGTCCATCCTCCAACTGTTTACCAGCAAAGATCAAACGCTGCTGGTCGGGAGGAATACC 2335 Query 480671 TTCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAGTG-TGTGAAGTTTCAA 480729 ||||||||| |||||||| ||||||| ||||| || || | | | | | || | Sbjct 2334 TTCCTTGTCCTGAATCTTGGCTTTGACATTGTCAATGGTGTCCGAGCTCTCCA-CCTCGA 2276 Query 480730 GGGTAATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 | || || ||||| || || || ||||| || || || || Sbjct 2275 GTGTGATCGTTTTGCCAGTAAGCGTCTTGACAAAGATCTG 2236 >seq53 Length=94643 Score = 105 bits (116), Expect = 4e-17 Identities = 158/221 (71%), Gaps = 4/221 (2%) Strand=Plus/Plus Query 480551 ACGAAGACGGAGTACAAGATGAA--GTGTACTTTCTTTAGAAACATTATAATCAGCTAGA 480608 |||||||||||| |||||||| | ||| ||| ||| ||| || || || | || Sbjct 56327 ACGAAGACGGAGGACAAGATGCAAGGTGGACTC-CTTCTGAATG-TTGTAGTCGGAAAGG 56384 Query 480609 GTTCTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATT 480668 || | | ||||||||| ||||| || ||||| |||||||| || || ||||||||||| Sbjct 56385 GTACGGCCATCTTCAAGCTGCTTGCCTGCAAAGATAAGACGCTGCTGGTCAGGAGGAATG 56444 Query 480669 CCTTCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAGTGTGTGAAGTTTCA 480728 || |||||||| |||||||| ||||| || ||||| || | | ||| Sbjct 56445 CCCTCCTTGTCCTGAATCTTGGCCTTGACGTTGTCGATAGTGTCCGAGGACTCGACTTCG 56504 Query 480729 AGGGTAATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 || ||||| || || ||||| | |||||| || || || || Sbjct 56505 AGCGTAATGGTCTTGCCGGTCAAAGTCTTGACAAAGATCTG 56545 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3267593213426828