Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilago_20xerochloae_20[genbank_20GCA_5F001736075.1_202016-09-20] 13,661 sequences; 24,230,715 total letters Query= NC_020852.1 Length=186468 Score E Sequences producing significant alignments: (Bits) Value seq36 178 2e-39 seq113 118 1e-21 seq67 98.7 1e-15 >seq36 Length=116313 Score = 178 bits (196), Expect = 2e-39 Identities = 885/1392 (64%), Gaps = 27/1392 (2%) Strand=Plus/Minus Query 75212 CCACAGTACATGTTCATGCGGGTCGCAATCGGCATCCACGGGGAAGACATTGATTCTGTC 75271 || ||| ||||| ||||||| || || | || || ||||| | ||||| || | | Sbjct 39279 CCCCAGCACATGCTCATGCGTGTTGCTGTTGGTATTCACGGCCAGGACATCGAGAGCGCC 39220 Query 75272 TTGGAGACATACGACAAGATGTCCCAAG-GTATGTTCATTCACGCAACACCAACCCTCTT 75330 | ||||| ||| || ||||| ||| ||| || | |||||| | ||||||||||| Sbjct 39219 ATCGAGACGTACAACCTCATGTCGCAAAAGTACTTT-ACTCACGCCTCGCCAACCCTCTT 39161 Query 75331 CAATGCTGGTACACCAAGACCGCAGATGTCCAGTTGCTTCCTTATCGCCAACAAGGAGGA 75390 ||| |||||||| || || ||| | || || |||||| | ||| ||||| || Sbjct 39160 CAACGCTGGTACTCCCCACCCACAGCTCTCGTCCTGTTTCCTTGTTACCATGAAGGATGA 39101 Query 75391 CTCAATCAACGGTATCTATGGAACTCTTACGGAGTGTGCGCAAATCTCAAAGTGGGCTGG 75450 ||| ||| |||| || || | || || | | ||||| ||||| ||| || || Sbjct 39100 CTCGATCGACGGCATTTACGACACCCTCAAGACCTGTGCCATGATCTCCAAGACCGCCGG 39041 Query 75451 GGGTATTGGGATGCACATCCATGATGTGAGAGCCAATAAATCTCGTATTCGGGGGACAAA 75510 || ||||| || |||| || | ||| | | || ||| || || || Sbjct 39040 TGGCATTGGTTTGAACATTCACTGCATTCGAGGTACTGGCTCCTACATTGCCGGCACCAA 38981 Query 75511 TGGTCAATCAG--ATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGCTAT 75568 ||| |||| | ||||| |||| |||||||| || || ||| ||| || || || Sbjct 38980 CGGT--GTCAGCAACGGTATCGTTCCCATGCTTCGTGTCTTCAACAACACCGCCCGTTAC 38923 Query 75569 GTAAATCAAGCGGG------GCGTCGCAAGGGGTCCATCGCGGTCTACTTGGAACCATGG 75622 || | || | || ||||| | || || | || ||||| | || || ||| Sbjct 38922 GTCGACCAGGGTGGTAACAAGCGTCCC---GGTGCCTTTGCCATCTACATTGAGCCTTGG 38866 Query 75623 CATGCCGATATCATGGAGTTCCTTGAGTTACGACTCAACCAAGGTGACGAAGAGGCTCGG 75682 || | ||| || | |||||||| || || || ||||| ||| | ||||| | ||| Sbjct 38865 CACTCGGATGTCTTTGAGTTCCTCGACTTGCGCAAGAACCACGGTAAGGAAGAAGTTCGT 38806 Query 75683 TGTAGAGATCTCTTTTCATCCCTGTGGATTCCAGACCTTTTCATGAAGCGGGTTGAGGAG 75742 | || ||||| | | || ||| |||| || || ||||||||| |||||||| || Sbjct 38805 GCCCGTGAACTCTTCTACGCTCTCTGGGTTCCCGATCTCTTCATGAAGAGGGTTGAGCAG 38746 Query 75743 GGTGGTCAATGGTCTCTTTTCTGTCCAGACAAGGCACCAGGTCTCTCCGACGCGGTGGGT 75802 ||| | ||||| || | || || || || || ||||| ||||| ||| Sbjct 38745 AACGGTGATTGGTCGCTCATGTGCCCCAACGAGTGCCCCGGTCTTGCCGACTGCTACGGT 38686 Query 75803 GAGGAGTTTGAAGCCCTCTACACAAAGTATGAAGAGGAGGGTAGAGCCAATGCG-ACTGT 75861 || ||||| || |||||| || || | || ||| | ||| ||| || || Sbjct 38685 GAAGAGTTCGAGCGTCTCTACGAGCGTTACGAGGCCGAAGGTCG-CTCAAAGCGCACCGT 38627 Query 75862 ACCAGCCGCCGATG-TTTGGAAGGCTATTCTCAAATCACAGACGGAGACTGGAACACCAT 75920 | || | | || | | ||| | || || ||| | || ||||| ||||| || | || | Sbjct 38626 -CAAGGCTCAGAAGCTCTGGTACGCCATCCTCGAGTCGCAGACCGAGACCGGTAACCCCT 38568 Query 75921 ATATGCTTTACAAGGATGCTTGTAACAAGAAGAGTAACCAAAAGAATTTGGGAACAATCA 75980 || || |||||||| ||| ||| ||| ||||| ||||| | || || |||| Sbjct 38567 TCATCCTCTACAAGGACGCTGCCAACCGCAAGTCCAACCAGAAGAACCTCGGTACTATCA 38508 Query 75981 AGAGCTCAAATCTTTGCACGGAAATTTTAGAGTACACAGATAAGGATGAGACGGCTGTTT 76040 || |||| || | ||||| || || | ||||||| | | |||||| ||||||| Sbjct 38507 AGTGCTCCAACTTGTGCACTGAGATCATCGAGTACAGTGCTCCCGATGAGGTTGCTGTTT 38448 Query 76041 GCAATTTGGCATCAATCGCCCTTCCAAAGTATGTCAATGAAGAGACTCGCACTTTTGATT 76100 |||| | || || ||||| ||||| | | || | | || | || | Sbjct 38447 GCAACCTTGCCTCCATCGCTCTTCCCACCTTCATCGACCCCGTTACCAAGGTCTACGACT 38388 Query 76101 ATGAAAAACTT-CATGAAATCACAAAGATTGTTACCAAAAATCTAAACCGAGTCATTGAC 76159 | || || || || | | ||| | | ||| || | ||| | |||| || Sbjct 38387 -TCAAGCGTTTGCACGAGGTTGCCAAGGCTATCTGCAAGAACTTGAACAAAATCATCGAT 38329 Query 76160 AGAAATTTTTATCCCGTTGAGACTGCGCGAAAGTCTAATATGCGACACAGACCTATTGGT 76219 | || | || || |||||| || || ||||| ||||| ||| | || |||||| Sbjct 38328 ATCAACTACTACCCTGTTGAGGAGGCTCGTCGTTCTAACATGCGTCACCGCCCCATTGGT 38269 Query 76220 TTGGGTGTTCAAGGTCTCGCGGATGTATTTATTTTGTGCCGCTACGCATTTGATTCAGAT 76279 | ||||| || |||||||| |||| || || | | ||||| ||||| || Sbjct 38268 ATCGGTGTCCAGGGTCTCGCCGATGCCTTCATGATCATGGGTTACGCCTTTGAGTCGCCC 38209 Query 76280 GAAGCCAAGGAGATGAATGCTCGTATCTTTGAAACCATGTATCACGCATCCCTGGAGGCG 76339 || || |||| | | ||||| || ||||| || ||||| | || || ||| Sbjct 38208 GAGGCTCGTCGCTTGAACGTCCAGATCTTCGAGACCATCTACCACGCCGCTCTCGA-GCG 38150 Query 76340 A-GTTGTGAATTGGCTGAAGCCCAAGGTTCCTATGAGACATTTGAGGGTTCTCCCGCGTC 76398 | || || ||||| | | || || |||| ||||| | | ||||| || || || Sbjct 38149 ATCGTGCGAGTTGGCCCAGGAGCATGGCACCTACGAGACCTACGCCGGTTCCCCTGCCTC 38090 Query 76399 CCAAGGGGTGCTTCAGTTTGATATGTGGGAAGGTGAAACCAAGCTCAAC--TACGACTGG 76456 ||| || | || |||| || ||||||| | | | || | | | | |||||| Sbjct 38089 CCAGGGTGAACTCCAGTACGACATGTGGGGTGTT--ACCCCTTCCGATCTTTGGGACTGG 38032 Query 76457 GATGTTCTCAAGGAACGCATCAAGGAGAAGGGTCTTCGTAACAGTCTTTTGATGGCACCA 76516 | | ||||||| ||| || | |||||||| ||| || ||| | || || Sbjct 38031 GCTTCGCTCAAGGCCAAGATCGCCAAGCACGGTCTTCGCAACTCGCTCTTGCTCGCTCCC 37972 Query 76517 ATGCCAACAGCCTCCACCGCACAAATCTTGGGTAATAATGAATGCTTTGAACCATACACA 76576 ||||| || || ||||| || ||||||||| || |||||||| || || ||||| Sbjct 37971 ATGCCTACCGCATCCACAAGTCAGATCTTGGGTTTCAACGAATGCTTCGAGCCCTACACC 37912 Query 76577 ACAAACATCTAC 76588 | ||||||||| Sbjct 37911 TCCAACATCTAC 37900 >seq113 Length=59678 Score = 118 bits (130), Expect = 1e-21 Identities = 275/409 (67%), Gaps = 12/409 (3%) Strand=Plus/Minus Query 13514 CTCAAGAAGACCGATGGTGCTCGCAAG---TCCAAAATTACCGGTATTCCCAAGTTGGAT 13570 |||||||||||||| || || |||| ||| || ||| || |||||| | || Sbjct 57205 CTCAAGAAGACCGACGG---TCACAAGCGTACCAGGATCACCAACATCCCCAAGCTCGAA 57149 Query 13571 GACGCGAACAAGGCGGGTACGGCA--CAATCTGGAAAGTGTACTCTCATTGTCACAGAGG 13628 || || ||||| || ||| |||| || || | ||||| |||||| |||| || | Sbjct 57148 GATGCCAACAATGCAGGT--GGCAGGAAAGCTAAGGACTGTACACTCATTCTCACCGAAG 57091 Query 13629 GTGATTCGGCTAAAACCCTCGCGGTTGCGGGTCTCTCTGTCGTTGGTCGTGATCACTACG 13688 |||| || || || | ||||| ||||| || || || || |||||||| |||||| Sbjct 57090 GTGACTCCGCCAAGGCTCTCGCTGTTGCCGGCCTTGTTGAAGTGGGTCGTGACAACTACG 57031 Query 13689 GTGTGTTCCCACTTCGCGGTAAATGTAAGAATGTTCGGGACGCTTCGGTGGCACAGCTCA 13748 |||| || || || || ||||| | || ||||| || || | | ||| ||| Sbjct 57030 GTGTCTTTCCGCTCCGTGGTAAGCTTCTCAACGTTCGTGAGGCCACTCACGACCAGATCA 56971 Query 13749 CATCAAACCAGGAGTTCAACGATCTCAAGAAGATCCTTGGTCTTCAACAAGGAAAAGACT 13808 ||| || |||| | |||| | || || ||||||||||| || || | | Sbjct 56970 TGAAGAACGCAGAAATCAAAGCCATCAAAGAAATTCTCGGTCTTCAACACGGCAAGCAAT 56911 Query 13809 ACCAAGATGTTTCTGAACTT-CGCTATGGTCGTCTTATGATTATGACAGATGCCGATAAT 13867 | | || ||| | | ||| || || || || | ||||| ||||| ||| ||| | Sbjct 56910 ATCTTGACGTTAGT-AGCTTGCGATACGGCAGTATCATGATCATGACCGATCAGGATCAC 56852 Query 13868 GATGGTTCTCACATCAAGGGTCTCATCCTAAATATGATCCACTACTTCT 13916 |||||||| || ||||||||||||||| | || | || || |||||| Sbjct 56851 GATGGTTCACATATCAAGGGTCTCATCATCAACTTCCTCGACCACTTCT 56803 >seq67 Length=86059 Score = 98.7 bits (108), Expect = 1e-15 Identities = 111/149 (74%), Gaps = 0/149 (0%) Strand=Plus/Minus Query 65069 CCTTCGCCGAGCGCCTTTTTGCGTTTGCGTGTGTGGAGGGTATCTTCTTCTCCGGGTCAT 65128 |||||||||| || || |||| ||||| || |||||||||||||||||||| || | Sbjct 4798 CCTTCGCCGAACGTCTCGTTGCCTTTGCCGCAGTTGAGGGTATCTTCTTCTCCGGCTCCT 4739 Query 65129 TCTGCGCTATTTATTGGTTGAAGAAGCGGGGTCTCATGCCAGGCCTATGCTTCTCAAATG 65188 || | | || | ||| | |||||||| ||||| ||||| || || |||||| || | Sbjct 4738 TCGCCTCCATCTTCTGGCTCAAGAAGCGTGGTCTTATGCCCGGACTCACCTTCTCCAACG 4679 Query 65189 AACTTATTTCCCGAGATGAGGGTCTCCAC 65217 | || || || || || || ||||| ||| Sbjct 4678 AGCTCATCTCACGCGACGAAGGTCTTCAC 4650 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 596467728283680