Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilago_20xerochloae_20[genbank_20GCA_5F001736075.1_202016-09-20] 13,661 sequences; 24,230,715 total letters Query= NC_021246.1 Length=281182 Score E Sequences producing significant alignments: (Bits) Value seq23 100 5e-16 >seq23 Length=140287 Score = 100 bits (110), Expect = 5e-16 Identities = 160/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 193131 ATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCG 193190 |||||||| | | || || |||| |||| || | ||| || || || ||||| Sbjct 1778 ATACCACCACGGAGACGGAGGACCAAGTGCAGGGTCGACTCCTTTTGGATGTTGTAGTCC 1719 Query 193191 GATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGA 193250 || | |||| ||| || | || |||||||||||||| | | ||| ||||| ||| Sbjct 1718 GAAAGAGTTCGTCCATCCTCAAGCTGCTTTCCGGCAAAAATGAGACGCTGCTGATCGGGA 1659 Query 193251 GGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCA 193310 || || || || || || || || |||| || | || ||| || |||||||||||| Sbjct 1658 GGGATCCCCTCCTTGTCCTGAATCTTGGCCTTGACGTTGTCAATGGTGTCGGAAGACTCA 1599 Query 193311 ACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 || || || || || || ||||| || || || ||||| || || ||||| Sbjct 1598 ACCTCGAGGGTGATGGTCTTACCGGTCAGAGTCTTTACGAAGATCTGCAT 1549 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 899500772765520