Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilago_20xerochloae_20[genbank_20GCA_5F001736075.1_202016-09-20] 13,661 sequences; 24,230,715 total letters Query= NC_021249.1 Length=282895 Score E Sequences producing significant alignments: (Bits) Value seq23 91.5 3e-13 >seq23 Length=140287 Score = 91.5 bits (100), Expect = 3e-13 Identities = 130/183 (71%), Gaps = 0/183 (0%) Strand=Plus/Minus Query 171887 AATATTATAATCTGATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCT 171946 |||||| ||||| || | || |||| | || ||||| |||||||||||||| || || | Sbjct 2415 AATATTGTAATCAGACAGAGTTCGTCCATCCTCCAACTGTTTACCAGCAAAGATCAAACG 2356 Query 171947 CTGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGT 172006 ||| ||||| || || || ||||| || || || || || ||| ||||| || || Sbjct 2355 CTGCTGGTCGGGAGGAATACCTTCCTTGTCCTGAATCTTGGCTTTGACATTGTCAATGGT 2296 Query 172007 ATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTG 172066 || || || || || || || || ||||| ||||| | || || | || ||||| Sbjct 2295 GTCCGAGCTCTCCACCTCGAGTGTGATCGTTTTGCCAGTAAGCGTCTTGACAAAGATCTG 2236 Query 172067 CAT 172069 ||| Sbjct 2235 CAT 2233 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 904981436713800