Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilago_20xerochloae_20[genbank_20GCA_5F001736075.1_202016-09-20] 13,661 sequences; 24,230,715 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq67 91.5 4e-13 seq34 87.8 5e-12 >seq67 Length=86059 Score = 91.5 bits (100), Expect = 4e-13 Identities = 110/150 (73%), Gaps = 0/150 (0%) Strand=Plus/Minus Query 133508 CGTCTCGTTGCTTTTGCTGTAGTAGAGGGCAtttttttCAGTGGTGCGTTCTGCTCTATT 133567 ||||||||||| ||||| | ||| ||||| || || ||| || | ||| ||| || Sbjct 4787 CGTCTCGTTGCCTTTGCCGCAGTTGAGGGTATCTTCTTCTCCGGCTCCTTCGCCTCCATC 4728 Query 133568 TTTTGGCTTAAAAAGCGTGGTATTCTACCTGGACTGTGTTTTTCTAACGAACTTATTTCA 133627 || ||||| || ||||||||| || | || ||||| || || ||||| || || ||| Sbjct 4727 TTCTGGCTCAAGAAGCGTGGTCTTATGCCCGGACTCACCTTCTCCAACGAGCTCATCTCA 4668 Query 133628 AGGGACGAGGCACTTCACACCGAATTTGCC 133657 | ||||| | ||||||||||| || ||| Sbjct 4667 CGCGACGAAGGTCTTCACACCGACTTCGCC 4638 >seq34 Length=122973 Score = 87.8 bits (96), Expect = 5e-12 Identities = 123/173 (71%), Gaps = 0/173 (0%) Strand=Plus/Plus Query 251487 ACCGTGTGAAATCATACAATCACGCTCCATTTCACCGAAACGAAGACCACCATCGCGAGC 251546 |||||| | |||||| |||||||| ||||| || |||||||| | ||||| | |||| Sbjct 115290 ACCGTGAGCAATCATGCAATCACGTTCCATCTCTCCGAAACGCAATCCACCTCCACGAGA 115349 Query 251547 CCTACCCTCGGCAGGCTGACGAGTGAGATTAACCATAGGACCGATGGAGCGGCTATGTTG 251606 | ||| || | ||||| || || || | || |||||| | || || Sbjct 115350 TCGACCTTCCACGGGCTGTCGTGTCAGGATCTGCACAGGACCACGTGCACGAGAGTGGAT 115409 Query 251607 CTTATCATTTACCATATGCTTGAGACGCTGGTAGAATGCGGGACCGATGAAGA 251659 ||| || | |||||||||||||||||||||||| | | |||||||| | ||| Sbjct 115410 CTTGTCGTCGACCATATGCTTGAGACGCTGGTAGTAGGTGGGACCGAGGTAGA 115462 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1471559985465757